| Sequence ID | dm3.chr2R |
|---|---|
| Location | 2,717,246 – 2,717,353 |
| Length | 107 |
| Max. P | 0.861430 |
| Location | 2,717,246 – 2,717,353 |
|---|---|
| Length | 107 |
| Sequences | 3 |
| Columns | 107 |
| Reading direction | forward |
| Mean pairwise identity | 89.68 |
| Shannon entropy | 0.13732 |
| G+C content | 0.55880 |
| Mean single sequence MFE | -36.97 |
| Consensus MFE | -26.69 |
| Energy contribution | -27.13 |
| Covariance contribution | 0.45 |
| Combinations/Pair | 1.03 |
| Mean z-score | -2.63 |
| Structure conservation index | 0.72 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.96 |
| SVM RNA-class probability | 0.861430 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 2717246 107 + 21146708 AGCGGCGAAGGUUCCUGUACUGUGCGGAAUCCUCGCUGUGUCGGUGUAUUGGUGUACCGGUGUACCGGUUUGUCGGUAUAUCGCUCUGUGUGUGUGCCAGUGUGUGU .(((((((.((((((.((.....)))))))).)))))))....(..((((((..((((((((((((((....)))))))))))........)))..))))))..).. ( -45.40, z-score = -4.48, R) >droSim1.chr2R 1529902 96 + 19596830 AGCGGCGAAGGUU---GUCCUGUGCGGAAUCCUUGCUGUGUCGGUGUAUUGGUGUACCGGUGU--------GUCGGUAUAUCGCUCGGAGUGUGUGCCAGUGUGUGU .(((((.((((..---.(((.....)))..)))))))))...((..((((((....)))))).--------.))((((((.(((.....)))))))))......... ( -33.90, z-score = -2.06, R) >droSec1.super_1 395810 96 + 14215200 AGCGGCGAAGGUU---GUCCUGUGCGGAAUCCUUGCUGUGUCGGUGUAUUGGUGUACCGGUGU--------GUCGGAAUAUCGCUCGGAGUGUGUGCCAGUGUGUGU .(((((.((((..---.(((.....)))..)))))))))....(..((((((..(((((((((--------......))))))........)))..))))))..).. ( -31.60, z-score = -1.36, R) >consensus AGCGGCGAAGGUU___GUCCUGUGCGGAAUCCUUGCUGUGUCGGUGUAUUGGUGUACCGGUGU________GUCGGUAUAUCGCUCGGAGUGUGUGCCAGUGUGUGU .(((((((.((......(((.....)))..)))))))))...((..(((.((((((((((............))))))))))((.....)))))..))......... (-26.69 = -27.13 + 0.45)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:04:08 2011