| Sequence ID | dm3.chr2R |
|---|---|
| Location | 2,716,683 – 2,716,771 |
| Length | 88 |
| Max. P | 0.547903 |
| Location | 2,716,683 – 2,716,771 |
|---|---|
| Length | 88 |
| Sequences | 8 |
| Columns | 89 |
| Reading direction | reverse |
| Mean pairwise identity | 78.75 |
| Shannon entropy | 0.43725 |
| G+C content | 0.43425 |
| Mean single sequence MFE | -21.31 |
| Consensus MFE | -12.27 |
| Energy contribution | -11.92 |
| Covariance contribution | -0.34 |
| Combinations/Pair | 1.59 |
| Mean z-score | -1.31 |
| Structure conservation index | 0.58 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.11 |
| SVM RNA-class probability | 0.547903 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 2716683 88 - 21146708 AAGGAAGCUGCGGCAGCUGCGAUU-GCCACGUUCUGUGGCGGCUGAUUUCGAAUGAAAUUGAAUCCCAUUAACUAAUCAUAAAGAAGUG ..(((((((((.((((..(((...-....))).)))).))))))((((((....))))))...)))....................... ( -23.80, z-score = -1.06, R) >droSim1.chr2R 1529290 88 - 19596830 AAGGAAGCUGCGGCAGCUGCGAUU-GCCACGUUCUGUGGCGGCCGAUUUCGAAUGAAAUUGAAUCCCAUUAACUAAUCAUAAAGAAGUG ..(((.(((((.((((..(((...-....))).)))).)))))(((((((....)))))))..)))....................... ( -24.60, z-score = -1.22, R) >droYak2.chr2L 15451010 73 - 22324452 ---------------AAGAAAGCG-GCCACGUUCUGUGGCGGCCGAUUUCGAAUGAAAUUGAAUCCCAUUAACUAAUCAUAAAGAAGUG ---------------..((..((.-(((((.....))))).))(((((((....)))))))...............))........... ( -17.50, z-score = -1.62, R) >droEre2.scaffold_4929 6809490 88 + 26641161 AAGGAAGCUGCGGUAGCUGCGAUU-GCCACGUUCUGCGGCGGCCGAUUUCAAAUGAAAUUGAAUCCCAUUAACUAAUCAUAAAGAAGUG ..(((.(((((.((((..(((...-....))).)))).)))))(((((((....)))))))..)))....................... ( -24.60, z-score = -1.48, R) >droAna3.scaffold_13266 9045736 88 - 19884421 AAGGAAGCUGCGGCAGCUGCGAUU-GCUACGUUUUGUGGUGGCCAAUUUCGAAUGAAAUUGAAUCCCAUUAACUAAUCAUAAAGAAGUG ..(((.((..(.((((..(((...-....))).)))).)..))(((((((....)))))))..)))....................... ( -20.20, z-score = -0.43, R) >dp4.chr3 990627 86 - 19779522 AAGGAAGCUGCGGCAGCUGCGAUU-GCUACGCUCUGUGGCGGACAAUUUGAAAUGAAAUUGAAUCCCAUUAACUAAUCAUAAAGAAU-- ..(((..((((.((((..(((...-....))).)))).)))).((((((......))))))..))).....................-- ( -20.90, z-score = -1.21, R) >droPer1.super_2 1169936 86 - 9036312 AAGGAAGCUGCGGCAGCUGCGAUU-GCUACGCUCUGUGGCGGACAAUUUCAAAUGAAAUUGAAUCCCAUUAACUAAUCAUAAAGAAU-- ..(((..((((.((((..(((...-....))).)))).)))).(((((((....)))))))..))).....................-- ( -24.20, z-score = -2.26, R) >droVir3.scaffold_12875 15669569 84 - 20611582 ---GAGGCUACAGAGCCCCAGCCCAGCUGCGC-GUGUAGUAAACAAUUUGAAAUCAAA-UAAACGCCAUUAACUAAUCAAAAGAAAUUG ---..(((((((..((..((((...)))).))-.)))).......(((((....))))-)....)))...................... ( -14.70, z-score = -1.25, R) >consensus AAGGAAGCUGCGGCAGCUGCGAUU_GCCACGUUCUGUGGCGGCCAAUUUCAAAUGAAAUUGAAUCCCAUUAACUAAUCAUAAAGAAGUG .....(((((...))))).......(((((.....)))))...(((((((....)))))))............................ (-12.27 = -11.92 + -0.34)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:04:07 2011