Locus 3122

Sequence ID	dm3.chr2R
Location	2,710,329 – 2,710,424
Length	95
Max. P	0.926652

overview

Window 8

Location	2,710,329 – 2,710,424
Length	95
Sequences	8
Columns	111
Reading direction	reverse
Mean pairwise identity	72.58
Shannon entropy	0.51257
G+C content	0.45536
Mean single sequence MFE	-30.88
Consensus MFE	-14.59
Energy contribution	-14.30
Covariance contribution	-0.29
Combinations/Pair	1.52
Mean z-score	-1.99
Structure conservation index	0.47
Background model	dinucleotide
Decision model	sequence based alignment quality
SVM decision value	1.32
SVM RNA-class probability	0.926652
Prediction	RNA

Download alignment: ClustalW | MAF

>dm3.chr2R 2710329 95 - 21146708
UCAUUGUUCGCACAAAUACG-------AUUCGCUGGCAUCCAG---------CAGUUUGUUUAUGCUUUCGCCCACAGCGGGCACAAUUUGUUUUAAUUGCGAGCAAAACA
...(((((((((.....(((-------(...(((((...))))---------).................((((.....)))).....))))......))))))))).... ( -28.90, z-score =  -2.64, R)
>droPer1.super_2 1163178 111 - 9036312
UUAUUGUUGGCAUAGAUAGUCGAUCCGGAGUCCCGAGCUCUGGCUGGGGUUCCGGCUGGCCUGGACUGUUGUUCAUGUUGUGCACAAUUUGCUUUAAUUGCGAGCAAAACA
......(((((((((...((((..(((((..(((.(((....))))))..))))).)))).(((((....)))))..)))))).)))(((((((.......)))))))... ( -39.90, z-score =  -2.03, R)
>dp4.chr3 984978 111 - 19779522
UUAUUGUUGGCAUAGAUAGUCGAUCCGGAGUCCCGAGCUCUGGCUGGGGUUCCGGCUGGCCUGGACUGUUGUUCAUGUUGUGCACAAUUUGCUUUAAUUGCGAGCAAAACA
......(((((((((...((((..(((((..(((.(((....))))))..))))).)))).(((((....)))))..)))))).)))(((((((.......)))))))... ( -39.90, z-score =  -2.03, R)
>droAna3.scaffold_13266 9038778 93 - 19884421
UCAUUGUUCCUUCGGAUAAC-------AAUUGCUGGCAUCCUG---------CCGUUUGUUUAUGUUCUGG--CACAGCAAGGACAAUUUGUUCUAAUUGCGAGCAAAACA
...((((((..(((((.(((-------((....((((.....)---------))).))))).....)))))--....((((((((.....)))))...))))))))).... ( -22.10, z-score =  -0.54, R)
>droEre2.scaffold_4929 6803406 101 + 26641161
UCAUUGUGCGCAC-AACACGGUGGCAAAUACGCUGGCAUCCAG---------CAGUUUGUUUAUGCCUUCGCCCACAGCGGGCACAAUUUGUUUUAAUUGCGAGCAAAACA
...((((.((((.-.....((((((((((..(((((...))))---------).)))))))...)))...((((.....))))...............)))).)))).... ( -30.00, z-score =  -0.55, R)
>droYak2.chr2L 15444726 95 - 22324452
UCAUUGUUCGCACAAAUACG-------AUUCGCUGGCAUCCAG---------CAGUUUGUUUAUGCUUUUGCCCACAGCGGACACAAUUUGUUUUAAUUGCGAGCAAAACA
...((((((((((((((...-------.((((((((((...((---------((.........))))..))))...))))))....)))))).......)))))))).... ( -28.41, z-score =  -2.89, R)
>droSec1.super_1 388914 95 - 14215200
UCAUUGUUCGCACAAAUACG-------AUUCGCUGGCAUCCAG---------CAGUUUGUUUAUGCUUUCGCCCACAGCGGGCACAAUUUGUUUUAAUUGCGAGCAAAACA
...(((((((((.....(((-------(...(((((...))))---------).................((((.....)))).....))))......))))))))).... ( -28.90, z-score =  -2.64, R)
>droSim1.chr2R_random 581412 95 - 2996586
UCAUUGUUCGCACAAAUACG-------AUUCGCUGGCAUCCAG---------CAGUUUGUUUAUGCUUUCGCCCACAGCGGGCACAAUUUGUUUUAAUUGCGAGCAAAACA
...(((((((((.....(((-------(...(((((...))))---------).................((((.....)))).....))))......))))))))).... ( -28.90, z-score =  -2.64, R)
>consensus
UCAUUGUUCGCACAAAUACG_______AUUCGCUGGCAUCCAG_________CAGUUUGUUUAUGCUUUCGCCCACAGCGGGCACAAUUUGUUUUAAUUGCGAGCAAAACA
...(((((((((....................(((.....)))...........(((((((...((....))....)))))))...............))))))))).... (-14.59 = -14.30 +  -0.29)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:04:06 2011