| Sequence ID | dm3.chr2R |
|---|---|
| Location | 2,660,565 – 2,660,617 |
| Length | 52 |
| Max. P | 0.831586 |
| Location | 2,660,565 – 2,660,617 |
|---|---|
| Length | 52 |
| Sequences | 6 |
| Columns | 52 |
| Reading direction | reverse |
| Mean pairwise identity | 74.87 |
| Shannon entropy | 0.49023 |
| G+C content | 0.48397 |
| Mean single sequence MFE | -16.75 |
| Consensus MFE | -7.78 |
| Energy contribution | -8.78 |
| Covariance contribution | 1.01 |
| Combinations/Pair | 1.47 |
| Mean z-score | -1.90 |
| Structure conservation index | 0.46 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.84 |
| SVM RNA-class probability | 0.831586 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 2660565 52 - 21146708 AGGCUUGCUGGUGAGCCGAGCUGGUUAUUCGGAUUGGUUCGAUUGGCCUAAU (((((......((((((((.((((....)))).))))))))...)))))... ( -19.90, z-score = -2.62, R) >droAna3.scaffold_13266 1549703 52 + 19884421 CCUCCAGCAGAUACUUCGAUUAGAUUAUGCAGCUGCGUACAAUAUGAUUAAU ......((((.....((.....))........))))................ ( -5.32, z-score = 0.63, R) >droEre2.scaffold_4929 6755986 52 + 26641161 AGGCUUGCUGGUAAACCCAGCUGGCUAUUCGGAUGGCUUCGAUUGGCCUAAU ......(((((.....))))).(((((.(((((....))))).))))).... ( -19.60, z-score = -2.02, R) >droYak2.chr2L 15396030 52 - 22324452 AGGCUUUCUGGUAAACCAGGCGGGUUAUUCAGAUAGUUUCGAUUGGCCUAAU ..((...((((....))))))((((((.((.((.....)))).))))))... ( -13.30, z-score = -1.05, R) >droSec1.super_1 332815 52 - 14215200 AGGCUUGCUGGUGAGCCGAGCUGGUUAUUCGAAUUGGUUCGGUUGGCCUAAU .........(((.((((((((..(((.....)))..)))))))).))).... ( -22.50, z-score = -3.69, R) >droSim1.chr2R 1474643 52 - 19596830 AGGCUUGCUGGUGAGCCGAGCUGGUUAUUCGGAUUGGUUCGAUUGGCCUAAU (((((......((((((((.((((....)))).))))))))...)))))... ( -19.90, z-score = -2.62, R) >consensus AGGCUUGCUGGUAAGCCGAGCUGGUUAUUCGGAUUGGUUCGAUUGGCCUAAU ......(((((....)).))).(((((.(((((....))))).))))).... ( -7.78 = -8.78 + 1.01)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:04:00 2011