| Sequence ID | dm3.chr2R |
|---|---|
| Location | 2,629,300 – 2,629,395 |
| Length | 95 |
| Max. P | 0.570734 |
| Location | 2,629,300 – 2,629,395 |
|---|---|
| Length | 95 |
| Sequences | 5 |
| Columns | 99 |
| Reading direction | forward |
| Mean pairwise identity | 71.28 |
| Shannon entropy | 0.48091 |
| G+C content | 0.46572 |
| Mean single sequence MFE | -24.22 |
| Consensus MFE | -12.31 |
| Energy contribution | -14.28 |
| Covariance contribution | 1.97 |
| Combinations/Pair | 1.37 |
| Mean z-score | -1.39 |
| Structure conservation index | 0.51 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.16 |
| SVM RNA-class probability | 0.570734 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 2629300 95 + 21146708 GCCGCCAUUUGGAUUUG--AAUAGCUAUCGAUAGGUG--CCGUCGGCCAGCUGACAAUCCAUCCACUGCCUAUCGAUAAUAUCUAGCUGAGCAAGAUGU ...((.((((......)--))).))(((((((((((.--..(((((....)))))............)))))))))))((((((.((...)).)))))) ( -25.36, z-score = -0.65, R) >droEre2.scaffold_4929 6725072 79 - 26641161 ACCGCCAAUUGAAUUUG--AAUAGCUAUCGAUAGUU---CCAUCGACCAGCUGGCA---------------AUCGAUAAUAUGCAGUCGAGCGAGAUUU ..(((.........(((--..(((((.(((((....---..)))))..))))).))---------------)(((((........))))))))...... ( -17.10, z-score = -0.64, R) >droYak2.chr2L 15365964 87 + 22324452 ACCGCCAAUUGGAGUUAUCGAUAGCUGUCAUCGGCCAGCUGACAGUCCAGACAGUAC------------CUAUCGAUAAUAUGCAGUCGAGCGAGAUUU ..((((.((((.(((((((((((((((((.((((....)))).......)))))...------------))))))))))).).)))).).)))...... ( -26.20, z-score = -2.37, R) >droSec1.super_1 301787 95 + 14215200 ACCGCCAUUUGGAUUUG--AAUAGCUAUCGAUAGGUG--CCGUCGGCCAGCUGACAAUCCAUCCACUGCCUAUCGAUGAUAUUCAGCUGAGCAAAAUUU ...((...(..(...((--((((..(((((((((((.--..(((((....)))))............))))))))))).)))))).)..)))....... ( -26.46, z-score = -1.74, R) >droSim1.chr2R 1443533 94 + 19596830 ACCGCCAUU-GGAUUUG--AAUAGCUAUCGAUAGGUG--CCGUCGGCCAGCUGACAAUCCAUCCACUGCCUAUCGAUGAUAUCUAGCUGAGCAAAUUUU .........-(((((((--..(((((((((((((((.--..(((((....)))))............))))))))).......))))))..))))))). ( -25.97, z-score = -1.57, R) >consensus ACCGCCAUUUGGAUUUG__AAUAGCUAUCGAUAGGUG__CCGUCGGCCAGCUGACAAUCCAUCCACUGCCUAUCGAUAAUAUCCAGCUGAGCAAGAUUU ...((((.((((((...........((((((((((((....(((((....)))))...........))))))))))))..)))))).)).))....... (-12.31 = -14.28 + 1.97)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:03:57 2011