| Sequence ID | dm3.chr2R |
|---|---|
| Location | 2,593,919 – 2,593,998 |
| Length | 79 |
| Max. P | 0.684684 |
| Location | 2,593,919 – 2,593,998 |
|---|---|
| Length | 79 |
| Sequences | 4 |
| Columns | 84 |
| Reading direction | reverse |
| Mean pairwise identity | 80.99 |
| Shannon entropy | 0.29132 |
| G+C content | 0.48992 |
| Mean single sequence MFE | -18.50 |
| Consensus MFE | -14.32 |
| Energy contribution | -14.08 |
| Covariance contribution | -0.25 |
| Combinations/Pair | 1.19 |
| Mean z-score | -1.48 |
| Structure conservation index | 0.77 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.41 |
| SVM RNA-class probability | 0.684684 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 2593919 79 - 21146708 CAAUACGAUGUGAUGUCGCACAUGCCUUUCAA-----CUCCCCUCACAUCUUUGAGGAAUUCUGUUCCCGGUAACGUAAUUCCC ...((((.((((....))))..((((....((-----(...(((((......)))))......)))...)))).))))...... ( -14.90, z-score = -0.99, R) >droYak2.chr2L 15337273 84 - 22324452 CAACACGAUGUGAUGCCCCACAGGCCAGUAAAAAUGCUGUUCCUCACAUCUUUAAGGAGUUCAGUUCUCGGGAACUUAAUUCCC ......(((((((.(((.....)))(((((....)))))....))))))).....((((((.(((((....))))).)))))). ( -27.30, z-score = -3.80, R) >droSec1.super_1 258346 74 - 14215200 CAACACGAUGUGAUGUCGCGCAUGCCUUCCAA-----CUCCCC-----UCUUUGAGGAAUUCUGUUCCCGGGAACGUAAUUCCC .......(((((......))))).........-----......-----.......((((((.(((((....))))).)))))). ( -15.70, z-score = -0.39, R) >droSim1.chr2R 1414010 74 - 19596830 CAACACGAUGUGAUGUCGCACAUGCCUUUCAA-----CUCCCC-----UCUUUGAGGAAUUCUGUUCCCGGGAACGUAAUUCCC .......(((((......))))).........-----......-----.......((((((.(((((....))))).)))))). ( -16.10, z-score = -0.73, R) >consensus CAACACGAUGUGAUGUCGCACAUGCCUUUCAA_____CUCCCC_____UCUUUGAGGAAUUCUGUUCCCGGGAACGUAAUUCCC .......(((((......)))))................................((((((.(((((....))))).)))))). (-14.32 = -14.08 + -0.25)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:03:55 2011