| Sequence ID | dm3.chr2R |
|---|---|
| Location | 2,549,660 – 2,549,763 |
| Length | 103 |
| Max. P | 0.864634 |
| Location | 2,549,660 – 2,549,763 |
|---|---|
| Length | 103 |
| Sequences | 5 |
| Columns | 112 |
| Reading direction | forward |
| Mean pairwise identity | 74.77 |
| Shannon entropy | 0.42444 |
| G+C content | 0.39905 |
| Mean single sequence MFE | -28.44 |
| Consensus MFE | -14.77 |
| Energy contribution | -17.53 |
| Covariance contribution | 2.76 |
| Combinations/Pair | 1.12 |
| Mean z-score | -2.04 |
| Structure conservation index | 0.52 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.97 |
| SVM RNA-class probability | 0.864634 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 2549660 103 + 21146708 ---------AGCUGUUGUGAUAUAUCAGAAACAUCGAUAGUCGCCAUAACAUAUUGUUAUUGUAUGAGAGUUUUAAAAUUAUCGAUGCGCUGAUGACCCCUUCAUCGGCGUU ---------.....((.(((....))).)).((((((((((.((.(((((.....))))).))((....))......))))))))))(((((((((.....))))))))).. ( -27.20, z-score = -2.27, R) >droEre2.scaffold_4929 6645331 98 - 26641161 AUAAAUCAGCGCCUUCGUGAUGGCUCAGAAACAUCGAUAGUCGCCAUAAAAUAUCGAAAUUUUAUAUGAAUC-----------GAUGCGUUAAUG---CCAUAAUCGGCGCU .......((((((......(((((...((..(((((((..(((..(((((((......))))))).))))))-----------))))..))...)---))))....)))))) ( -29.50, z-score = -2.86, R) >droYak2.chr2L 15294594 109 + 22324452 AUAAAUCACCGUCGUCCUGUUGGCUCAGAAACAUCGAUAGUCGCCAUAACAUAUCGAUUUUUUAUAUGAAUCUCAAAAUCAUCGAUGCGUUGAUG---CCUUAGUCGGCGCU .........(((((..(((..(((((((...(((((((.((.......)).....(((((.......)))))........)))))))..)))).)---)).))).))))).. ( -25.00, z-score = -1.04, R) >droSec1.super_1 216052 103 + 14215200 ---------AACUGUCGUGAUGUGUCUGAAACAUCGAUAGUCGCCAUAACAUAUUGAUAUUGUAUGUGCGUUUUAAAAUUAUCGAUGCGCUGAUGACGCCUUCAUCGGCGUU ---------....(((..(((((.......)))))(((((((((((((.((.........)))))).))).......)))))))))((((((((((.....)))))))))). ( -29.51, z-score = -1.67, R) >droSim1.chr2R 1373607 103 + 19596830 ---------AACUGUCGUGAUGUGUCAGAAACAUCGAUAGUCGCCAUAACAUAUUGAUAUUGUAUGUGCGUUUUAAAAUUAUCGAUGCGCUGAUGACCCAUUCAUCGGCGUU ---------..(((.((.....)).)))...(((((((((((((((((.((.........)))))).))).......))))))))))(((((((((.....))))))))).. ( -31.01, z-score = -2.35, R) >consensus _________AGCUGUCGUGAUGUCUCAGAAACAUCGAUAGUCGCCAUAACAUAUUGAUAUUGUAUGUGAGUUUUAAAAUUAUCGAUGCGCUGAUGAC_CCUUCAUCGGCGUU ................................(((((((((.......((((((.......))))))..........)))))))))((((((((((.....)))))))))). (-14.77 = -17.53 + 2.76)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:03:52 2011