| Sequence ID | dm3.chr2L |
|---|---|
| Location | 2,226,022 – 2,226,142 |
| Length | 120 |
| Max. P | 0.670607 |
| Location | 2,226,022 – 2,226,142 |
|---|---|
| Length | 120 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 87.67 |
| Shannon entropy | 0.24077 |
| G+C content | 0.40345 |
| Mean single sequence MFE | -24.62 |
| Consensus MFE | -21.34 |
| Energy contribution | -21.73 |
| Covariance contribution | 0.39 |
| Combinations/Pair | 1.15 |
| Mean z-score | -1.24 |
| Structure conservation index | 0.87 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.39 |
| SVM RNA-class probability | 0.670607 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 2226022 120 - 23011544 UGUGUAAAUCAGCCGGAAAACUCGAAGAAACUCUCAGAGGCAAAGGCUUCCGCUGGAAAAGAGAUGAUUCUCAUGAUGCAGCACGUAAAUACCAAGCAAAUCAAAACAAAUAACCAAAUA .((((...(((((.((((..(((..((.....))..)))((....)))))))))))....((((....))))........)))).................................... ( -24.10, z-score = -1.14, R) >droSim1.chr2L 2180449 120 - 22036055 UGUGUCAAUCAGCCGGAAAACUCGAAGAAACUCUCAGAGGCAAAGGCUUCCGCUGGAAAAGAGAUGAUUCUCAUGAUGCAGCACGUAAAUACCAAGCAAAUCAAAACAAAUAACCAAAUA (((((((.(((((.((((..(((..((.....))..)))((....)))))))))))....((((....)))).)))))))((..((....))...))....................... ( -26.30, z-score = -1.66, R) >droSec1.super_5 400674 120 - 5866729 UGUGUCAAUCAGCCGGAAAACUCGAAGAAACUCUCAGAGGCAAAGGCUUCCGCUGGAAAAGAGAUGAUUCUCAUGAUGCAGCACGUAAAUACCAAGCAAAUCAAAACAAAUAACCAAAUA (((((((.(((((.((((..(((..((.....))..)))((....)))))))))))....((((....)))).)))))))((..((....))...))....................... ( -26.30, z-score = -1.66, R) >droYak2.chr2L 2199002 120 - 22324452 UGUGUCAAUCAGCCGGAAAACUCCAAGAAACUCUCAGAGGCGAAGGCUUCCGCUGGAAAGGAAAUGAUUCUCAUGAUGCAGCACGUAAAUACCAAGCCAAUCAGAAAAAAUAACUGAAUA (((((((.(((((.((((..(((..((.....))..)))((....)))))))))))...((((....))))..)))))))....................((((.........))))... ( -25.60, z-score = -0.56, R) >droEre2.scaffold_4929 2260970 120 - 26641161 UGUGUCAAUCAGCCGGAAAACUCCAAAAAACUCUCAGAGGCAAAGGCUUCCGCUGGAAAAGAGAUGAUUCUCAUGAUGCAGCACGUAAAUACCAAACAAAUCAAAACAAAUAACUACAUA (((((((.(((((.(((....)))............(((((....))))).)))))....((((....)))).)))))))........................................ ( -24.90, z-score = -2.13, R) >droAna3.scaffold_12916 9935802 111 + 16180835 UGCGUUAAUCAGCCGGAAAACUCGAAAAAACUUUCUGAAGCCAAGGCCUCCGCUGGGAAAGAAAUGAUUCUUAUGAUGCAGCAUGUAAAUAUAAUAAUACCCAACAGUUAU--------- (((((((.(((((.(((......((((....))))....((....)).))))))))..(((((....))))).)))))))...............................--------- ( -20.50, z-score = -0.31, R) >consensus UGUGUCAAUCAGCCGGAAAACUCGAAGAAACUCUCAGAGGCAAAGGCUUCCGCUGGAAAAGAGAUGAUUCUCAUGAUGCAGCACGUAAAUACCAAGCAAAUCAAAACAAAUAACCAAAUA (((((((.(((((.((((..(((..((.....))..)))((....)))))))))))....((((....)))).)))))))........................................ (-21.34 = -21.73 + 0.39)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:10:33 2011