| Sequence ID | dm3.chr2R |
|---|---|
| Location | 2,513,239 – 2,513,335 |
| Length | 96 |
| Max. P | 0.506480 |
| Location | 2,513,239 – 2,513,335 |
|---|---|
| Length | 96 |
| Sequences | 12 |
| Columns | 112 |
| Reading direction | reverse |
| Mean pairwise identity | 68.06 |
| Shannon entropy | 0.66235 |
| G+C content | 0.61362 |
| Mean single sequence MFE | -33.79 |
| Consensus MFE | -17.67 |
| Energy contribution | -16.47 |
| Covariance contribution | -1.21 |
| Combinations/Pair | 1.61 |
| Mean z-score | -0.42 |
| Structure conservation index | 0.52 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.02 |
| SVM RNA-class probability | 0.506480 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 2513239 96 - 21146708 ------------GAAGGAUGCACAUUC----CACCGCCCGUUGGACGCCGAUGCAUUCGUGAUGCUGAGAAUGCGGAGGAGCUCAACCUGUGCGGAGGCGCUGAAUUCCCGG ------------...(((..((....(----(.(((((.((((..(.((..(((((((..........)))))))..)).)..))))..).)))).))...))...)))... ( -30.80, z-score = 0.22, R) >droSim1.chr2R 1336109 96 - 19596830 ------------GGAGGAUGCACAUUC----CCCCGCCCGUUGGACGCCGAUGCAUUCGUGAUGCUGAGAAUGCGGAGGAGCUCAACCUGUGCGGAGGCGCUGAAUUCCCGG ------------((.((((.((....(----(.(((((.((((..(.((..(((((((..........)))))))..)).)..))))..).)))).))...)).)))))).. ( -32.70, z-score = 0.13, R) >droSec1.super_1 176895 96 - 14215200 ------------GGAGGAUGCACAUUC----CACCGCCCGUUGGACGCCGAUGCAUUCGUGAUGCUGAGAAUGCGGAGGAGCUCAACCUGUGCGGAGGCGCUGAAUUCUCGG ------------.((((((.((....(----(.(((((.((((..(.((..(((((((..........)))))))..)).)..))))..).)))).))...)).)))))).. ( -34.30, z-score = -0.42, R) >droYak2.chr2L 15259648 96 - 22324452 ------------GAAGGAUGCACAUUC----CACCGCCCGUUGGACGCCGAUGCAUUCGUGAUGCUGAGAAUGCGGAGGUGCUCAACCUGUGCGGAGGCGCUAAAUUCCCGG ------------...(((........(----(.(((((.((((..((((..(((((((..........)))))))..))))..))))..).)))).))........)))... ( -34.09, z-score = -0.89, R) >droEre2.scaffold_4929 6609297 96 + 26641161 ------------GAAGGAUGCACAUUC----CACCGCCCGUUGGACGCCGAUGCAUUCGUGAUGCUGAGAAUGCGGAGGAGCUCAACCUGUGCGGAGGCGCUAAAUUCCCGG ------------...(((........(----(.(((((.((((..(.((..(((((((..........)))))))..)).)..))))..).)))).))........)))... ( -30.29, z-score = 0.09, R) >dp4.chr3 18215054 96 - 19779522 ------------GGAGGCGACAUCAUC----CUCUGCCCGUCGGUCGCCGAUGCAUUCAAGAUGCUGAGAAUGUGGAGGCGUCUGACCAGUGCGGAGGCGUCACCUUCCCGG ------------(((((.(((.....(----(((((((.(((((.((((..(((((((..........)))))))..)))).)))))..).))))))).))).))))).... ( -43.80, z-score = -2.41, R) >droPer1.super_34 158898 96 - 916997 ------------GGAGGCGACAUCAUC----CUCUGCCCGUCGGUCGCCGAUGCAUUCAAGAUGCUGAGAAUGUGGAGGCGUCUGACCUGUGCGGAGGCGUCACCUUCCCGG ------------(((((.(((.....(----(((((((.(((((.((((..(((((((..........)))))))..)))).)))))..).))))))).))).))))).... ( -43.80, z-score = -2.42, R) >droWil1.scaffold_180699 1042140 108 + 2593675 AACUUCCAACUUGGAGCCUGCCUUCCCUAAGUCUUAACCCUUGAUGGCCGAUGUAUUCACGAUGCUGAGAAUGCGGAGGUCUUCAACCUGCUAAUGGCUGACGAACGC---- ...((((.....))))...((.(((....(((((((.(..((((.((((..(((((((.((....)).)))))))..)))).))))...).))).))))...))).))---- ( -25.40, z-score = -0.37, R) >droAna3.scaffold_13266 1363838 96 + 19884421 ------------GGAGCGGACAACCAC----CCCUGCCCGUUGGACCCCGAUGCAAUCAUGAUGCUGAGACUGCGGAGGAGCUCAACCUGUGCGAGGGCGUCAACUCCCCGG ------------((((..(((.....(----((.((((.((((..(.((..((((.(((......)))...))))..)).)..))))..).))).))).)))..)))).... ( -30.70, z-score = 0.23, R) >droVir3.scaffold_12875 5126151 97 - 20611582 -----CCGGUGGGCGUGGCAAGAGCAC----CCCUGCCCGUUGGCCGCCGAUGCAUUCGUGAUGCUGAGAACGCGGAGGUGACCAACCCGUGCAGCUGGGCGCCCA------ -----....(((((((.((....)).(----(.(((((.(((((.((((..(((.(((..........))).)))..)))).)))))..).))))..)))))))))------ ( -39.40, z-score = 0.41, R) >droMoj3.scaffold_6496 1900540 78 + 26866924 ------------CUGCGGUGCGUG---------CUGCCCCUUGGCCGCCGAUGCAUUCGUGAUGCUGAGAAAGCGGAGGUGACCAACCCGUGCAGAUCG------------- ------------((((((.((...---------..)).))((((.((((..(((.(((..........))).)))..)))).)))).....))))....------------- ( -25.10, z-score = 0.13, R) >droGri2.scaffold_15112 151435 104 - 5172618 ----CUUGGAUGUGAGGGCAACUAGUU----CCCUGCCCGUUGGCUGCCGAUGCAAUCGUGAUGCUGAGAGCGCGGAGGUGACCAACCUGUGCAGGGCUGCUCCCAACUCUC ----...(((.((..(((.....(((.----(((((((.(((((..(((..(((..((..........))..)))..)))..)))))..).))))))..)))))).))))). ( -35.10, z-score = 0.31, R) >consensus ____________GGAGGAUGCACAUUC____CCCUGCCCGUUGGACGCCGAUGCAUUCGUGAUGCUGAGAAUGCGGAGGAGCUCAACCUGUGCGGAGGCGCUAAAUUCCCGG .................................((((..(((((.(.((..(((.(((..........))).)))..)).).)))))....))))................. (-17.67 = -16.47 + -1.21)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:03:49 2011