Locus 3105

Sequence ID	dm3.chr2R
Location	2,503,071 – 2,503,125
Length	54
Max. P	0.890799

overview

Window 3

Location	2,503,071 – 2,503,125
Length	54
Sequences	6
Columns	54
Reading direction	reverse
Mean pairwise identity	89.01
Shannon entropy	0.21578
G+C content	0.66605
Mean single sequence MFE	-24.08
Consensus MFE	-21.33
Energy contribution	-21.58
Covariance contribution	0.25
Combinations/Pair	1.17
Mean z-score	-1.64
Structure conservation index	0.89
Background model	dinucleotide
Decision model	sequence based alignment quality
SVM decision value	1.10
SVM RNA-class probability	0.890799
Prediction	RNA

Download alignment: ClustalW | MAF

>dm3.chr2R 2503071 54 - 21146708
CGCCGUGGCUAAGUUAAGCAGUCCAAAGGGAUUGCCAGCUGGGGCCGCCGCUGC
.((.((((((.((((..(((((((....))))))).))))..)))))).))... ( -26.40, z-score =  -2.30, R)
>droSim1.chr2R 1326067 54 - 19596830
CGCCGUGGCUAAGUUAAGCAGUCCAAAGGGAUUGCCAGCCGGGGCCGCCGCUGC
.((.((((((..(((..(((((((....))))))).)))...)))))).))... ( -24.30, z-score =  -1.48, R)
>droSec1.super_1 166801 54 - 14215200
CGCCGUGGCUAAGUUAAGCAGUCCAAAGGGAUUGCCAGCCGGGGCCGCCGCUGC
.((.((((((..(((..(((((((....))))))).)))...)))))).))... ( -24.30, z-score =  -1.48, R)
>droYak2.chr2L 15250740 54 - 22324452
CGCCGUGGCUAAGUUAAGCAGUCCAAAAGGAUUGCCAGCCGGGGCCGCCGCUGC
.((.((((((..(((..(((((((....))))))).)))...)))))).))... ( -24.40, z-score =  -1.97, R)
>droEre2.scaffold_4929 6599564 54 + 26641161
CGCCGUGGCUAAGUUAAGCAGUCCAAACGGAUUGCCAGCCGGGGCCGCCGCUGC
.((.((((((..(((..(((((((....))))))).)))...)))))).))... ( -24.40, z-score =  -1.73, R)
>droAna3.scaffold_13266 1347419 50 + 19884421
CUCUGUGGC---GCUCAGCAGGCCAAAGGGAUUCCCGGUCGAGGCCGCAGCCG-
..(((((((---.(((....((((...(((...)))))))))))))))))...- ( -20.70, z-score =  -0.91, R)
>consensus
CGCCGUGGCUAAGUUAAGCAGUCCAAAGGGAUUGCCAGCCGGGGCCGCCGCUGC
.((.((((((..(((..(((((((....))))))).)))...)))))).))... (-21.33 = -21.58 +   0.25)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:03:45 2011