| Sequence ID | dm3.chr2R |
|---|---|
| Location | 2,491,964 – 2,492,018 |
| Length | 54 |
| Max. P | 0.904761 |
| Location | 2,491,964 – 2,492,018 |
|---|---|
| Length | 54 |
| Sequences | 4 |
| Columns | 54 |
| Reading direction | reverse |
| Mean pairwise identity | 93.52 |
| Shannon entropy | 0.10517 |
| G+C content | 0.53241 |
| Mean single sequence MFE | -18.92 |
| Consensus MFE | -16.39 |
| Energy contribution | -16.70 |
| Covariance contribution | 0.31 |
| Combinations/Pair | 1.06 |
| Mean z-score | -2.15 |
| Structure conservation index | 0.87 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.18 |
| SVM RNA-class probability | 0.904761 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 2491964 54 - 21146708 ACUCGAAUUCGAACUCAAACCGAAGUUGAAGUCGACGCCGCGACAAGUGGCGGC ..((((.(((((..((.....))..))))).))))((((((.....)))))).. ( -19.90, z-score = -2.25, R) >droSim1.chr2R 1314371 54 - 19596830 ACUCGAAUUCGAACUCAAACCGAAGUUGAAGUCGACGCCGCGACAAGUGGCGGC ..((((.(((((..((.....))..))))).))))((((((.....)))))).. ( -19.90, z-score = -2.25, R) >droSec1.super_1 155763 54 - 14215200 ACUCGAAUUCGAACUCAAACCGAAGUUGAAGUCGACGCCGCGACAAGUGGCGGC ..((((.(((((..((.....))..))))).))))((((((.....)))))).. ( -19.90, z-score = -2.25, R) >droYak2.chr2L 15240716 54 - 22324452 ACUCAAAUUUGAACUCAAAUCGAUGUUGAAUUCGAGGCCGCGACAAGUGGCGGU .(((.((((..(..((.....))..)..)))).)))(((((.....)))))... ( -16.00, z-score = -1.84, R) >consensus ACUCGAAUUCGAACUCAAACCGAAGUUGAAGUCGACGCCGCGACAAGUGGCGGC ..((((.(((((..((.....))..))))).))))((((((.....)))))).. (-16.39 = -16.70 + 0.31)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:03:45 2011