| Sequence ID | dm3.chr2R |
|---|---|
| Location | 2,478,951 – 2,479,042 |
| Length | 91 |
| Max. P | 0.565476 |
| Location | 2,478,951 – 2,479,042 |
|---|---|
| Length | 91 |
| Sequences | 9 |
| Columns | 103 |
| Reading direction | reverse |
| Mean pairwise identity | 62.81 |
| Shannon entropy | 0.73225 |
| G+C content | 0.53727 |
| Mean single sequence MFE | -26.41 |
| Consensus MFE | -10.19 |
| Energy contribution | -10.89 |
| Covariance contribution | 0.70 |
| Combinations/Pair | 1.71 |
| Mean z-score | -0.88 |
| Structure conservation index | 0.39 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.15 |
| SVM RNA-class probability | 0.565476 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 2478951 91 - 21146708 GCAGCCUUUCAUCCUGAUUGCGGUCCAGCCCUAAUCCAGGUC-CUGCAUCCGUUUGCCGCCUCAUUGGGCGGAUCGUUUGGGUGACUGACUG----------- .(((.(..((((((.....(((((((.((((......((((.-..(((......))).))))....)))))))))))..))))))..).)))----------- ( -35.10, z-score = -2.41, R) >droSim1.chr2R 1301375 91 - 19596830 GCAGCCUUUCAUCCUGAUUGCGGUCCAGCCCUAAUCCAGGUC-CUGCAUCCGUUUGCCGCCUCAUUGGGCGGAUCGUUUGGGUGACUGACUG----------- .(((.(..((((((.....(((((((.((((......((((.-..(((......))).))))....)))))))))))..))))))..).)))----------- ( -35.10, z-score = -2.41, R) >droSec1.super_1 142983 91 - 14215200 GCAGCCUUUCAUCUUGAUUGCGGUCCAGCCCUAAUCCAGGUC-CUGCAUCCGUUUGCCGCCUCAUUGGGCGGAUCGUUUGGGUGACUGACUG----------- .(((.(..((((((.....(((((((.((((......((((.-..(((......))).))))....)))))))))))..))))))..).)))----------- ( -33.20, z-score = -1.93, R) >droYak2.chr2L 15228209 91 - 22324452 GCAGCCUUUCAUCCUGAUUGCGGUCCAGCCCUAAUCCAGGUC-CUGCAUCCGUUUGCCGCCUCAUUGGGCGGAUCGUUUGGGUGACUGACUG----------- .(((.(..((((((.....(((((((.((((......((((.-..(((......))).))))....)))))))))))..))))))..).)))----------- ( -35.10, z-score = -2.41, R) >droEre2.scaffold_4929 6575121 91 + 26641161 GCAGCCUUUCAUCCUGAUUGUGGUCCAGCCCUAAUCCAGGUC-CUGCAUCCGCUUGCCGCCUCAUUGGGCGGAUCGUUUGGGUGACUGACUG----------- .(((.(..((((((.(((...(((((.((((......((((.-..(((......))).))))....)))))))))))).))))))..).)))----------- ( -31.10, z-score = -1.07, R) >droAna3.scaffold_13266 1322218 80 + 19884421 -----------UCCAGAUUGCGGUCCAGCCUUUCACAGAGUC-CUGCAUUCGUUUGCCGCCUCAUUGCACGGAUCGUUUGAGUGACUGACUG----------- -----------.........(((((.((.(.((((.(..(((-(((((.................)))).))))..).)))).).)))))))----------- ( -16.03, z-score = 1.32, R) >droPer1.super_34 124434 78 - 916997 ------------GGGGAUCCAGAGACAGUCGGACACC-UUUC-CAGCACCAUUUUGACGCAUCAUUGAGCGUAUCGUUUGAGUGACUGACUG----------- ------------((....)).....((((((((....-..))-)(((((((.....((((........))))......)).))).)))))))----------- ( -18.80, z-score = -0.00, R) >droWil1.scaffold_180699 1000685 99 + 2593675 ----ACAUCAGAGUGAACCAUAUGUUGGUUGGACUUGGGGCCACCUUUUUUUUGUGUCGCAUCAUUGAGUCAAGCUUUGAACUGACUGACUGAAACUGAAUUG ----...(((((((.(((((.....))))).((((..(.((.(((........).)).))....)..))))..)))))))....................... ( -22.00, z-score = 0.24, R) >droGri2.scaffold_15112 106987 87 - 5172618 ----ACACGCCCUCUAUCGGUUACACAUAUGUCCAGUGGACACCUAUUGACACAUUCCGCAUUUUGGAACGCAUCAUU-GAACAACUCACUG----------- ----....((..((((.(((........((((.((((((....))))))..)))).))).....))))..))......-.............----------- ( -11.30, z-score = 0.77, R) >consensus GCAGCCUUUCAUCCUGAUUGCGGUCCAGCCCUAAUCCAGGUC_CUGCAUCCGUUUGCCGCCUCAUUGGGCGGAUCGUUUGGGUGACUGACUG___________ ......................................((((....((((((....((((........))))......))))))...))))............ (-10.19 = -10.89 + 0.70)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:03:44 2011