| Sequence ID | dm3.chr2R |
|---|---|
| Location | 2,430,081 – 2,430,178 |
| Length | 97 |
| Max. P | 0.586581 |
| Location | 2,430,081 – 2,430,178 |
|---|---|
| Length | 97 |
| Sequences | 7 |
| Columns | 105 |
| Reading direction | forward |
| Mean pairwise identity | 65.86 |
| Shannon entropy | 0.64685 |
| G+C content | 0.57854 |
| Mean single sequence MFE | -24.15 |
| Consensus MFE | -9.94 |
| Energy contribution | -10.23 |
| Covariance contribution | 0.29 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.11 |
| Structure conservation index | 0.41 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.19 |
| SVM RNA-class probability | 0.586581 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 2430081 97 + 21146708 UCGUGUUUUGGGAUCUGACCCCUUUCUUCUCCUCCCCCCAC--------UUCUCCCACACCCACUUCAUGUCGACAGCAACCGUCUCCGGGCUGUUGCACAUUUA ..(((...(((((............................--------...)))))....)))...(((((((((((..(((....)))))))))).))))... ( -20.78, z-score = -1.74, R) >droSim1.chr2R 1255991 96 + 19596830 UCGUGUUUUGGGCUCUGACCCCUUCCUUCUCCUCCCCCACU---------UGUCCCACUCCCACUUCAUGUCGACAGCAACCGUCUCCGGGCUGUUGCACAUUUA ..(((...(((((............................---------.).))))....)))...(((((((((((..(((....)))))))))).))))... ( -19.75, z-score = -1.24, R) >droSec1.super_1 100067 90 + 14215200 UCGUGUUUUGGGCUCUGACCCCUUCCUUCUCCUCCCCCACU---------UG------UCCCACUUCAUGUCGACAGCAACCGUCUCCGGGCUGUUGCACAUUUA ..(((....((((............................---------.)------))))))...(((((((((((..(((....)))))))))).))))... ( -18.55, z-score = -0.81, R) >droYak2.chr2L 15185519 105 + 22324452 UCGUGUUUUGGGCUCUGGCCCCUUCCUGCUCCUUCUCCUUUGCCACCCCCUGACCCACUCCCACUUCAUGUCGACAGCAAACGUCUCCGGGCUGUUGCACAUUUA ..(((..(..((...((((......................))))...))..)..))).........(((((((((((...((....)).))))))).))))... ( -25.25, z-score = -1.62, R) >droAna3.scaffold_13266 1277378 100 - 19884421 UCGGGCUUUGGCUUGCGGGGUCUUGGAGCGCCACGCCCCAC-----CAGCUGCCACCCCACAUCUCCACGGCGACAGCCAACGUCUCCAGGCUGUUGCACAUUUA ..(((...((((..(((((((..(((....))).)))))..-----..)).)))).)))...........(((((((((..........)))))))))....... ( -38.30, z-score = -1.28, R) >droPer1.super_34 79175 92 + 916997 -------CCACUCCCCCAUCCACCCAAACAGCGCCCUCCAC------UCCCGCUGGAGGAGGACUUGAUGUCGACAGCAAACGUCUCCAGGCUGUUGCACAUUUA -------...........(((.((....(((((........------...)))))..)).)))...((((((((((((............))))))).))))).. ( -23.40, z-score = -0.99, R) >dp4.Unknown_singleton_1713 1971 92 - 2189 -------CCACUCCCCCAUCCACCCAAAGAGCGCCCUCCAC------UGCCGCUGGAGGAGGACUUGAUGUCGACAGCAAACGUCUCCAGGCUGUUGCACAUUUA -------...((((.(((((........))((((.......------.).)))))).)))).....((((((((((((............))))))).))))).. ( -23.00, z-score = -0.07, R) >consensus UCGUGUUUUGGGCUCUGACCCCUUCCUUCUCCUCCCCCCAC________CUGCCCCACUCCCACUUCAUGUCGACAGCAAACGUCUCCGGGCUGUUGCACAUUUA ...................................................................(((((((((((............))))))).))))... ( -9.94 = -10.23 + 0.29)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:03:40 2011