| Sequence ID | dm3.chr2L |
|---|---|
| Location | 2,200,781 – 2,200,941 |
| Length | 160 |
| Max. P | 0.512191 |
| Location | 2,200,781 – 2,200,941 |
|---|---|
| Length | 160 |
| Sequences | 5 |
| Columns | 166 |
| Reading direction | forward |
| Mean pairwise identity | 82.22 |
| Shannon entropy | 0.31448 |
| G+C content | 0.56016 |
| Mean single sequence MFE | -40.70 |
| Consensus MFE | -26.29 |
| Energy contribution | -27.84 |
| Covariance contribution | 1.55 |
| Combinations/Pair | 1.10 |
| Mean z-score | -1.63 |
| Structure conservation index | 0.65 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.04 |
| SVM RNA-class probability | 0.512191 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 2200781 160 + 23011544 CUUUAAGCUACUCUUC----CCUCCUCACGACUGUGACCCCUUUCCCUGCUGCAUUGCGGCUGCAAUUACGCCAACGUCAUCGUGUUCGUACGGCGUGCAAUUUCUUCUAUGUGCACGUAGCUGCACUUAUCUGCCCCUUCUGCCCC-ACCCCC-GGCUGCACAGA ................----.....((((....)))).........(((.((((.(((((((((......(((.(((....)))((....)))))(((((............))))))))))))))................(((..-......-)))))))))). ( -39.90, z-score = -1.96, R) >droSim1.chr2L 2154712 158 + 22036055 --CUUCUCUGCUCUUC----CCUCCUCACGACUGUG-CCCCUUUCGCAGCUGCAUUGCGGCUGCAAUUACGCCAACGUCAUCGUGUUCGUACGGCGUGCAAUUUCUUCUAUGUGCACGUAGCUGCACUUAUCUGCCCCUUGUGCCCCCACCCCC-GGCUGCACAGA --..............----...........(((((-(.......((((((((......((((....((((...(((....)))...))))))))(((((............)))))))))))))........(((....(((....)))....-))).)))))). ( -45.40, z-score = -2.56, R) >droSec1.super_5 378198 159 + 5866729 --CUUCUCUACUCUUC----CCUCCUCACGACUGUG-CCCCUUUCGCAGCUGCAUUGCGGCUGCAAUUACGCCAACGUCAUCGUGUUCGUACGGCGUGCAAUUUCUUCUAUGUGCACGUAGCUGCACUUAUCUGCCCCUCCUGCCCCCACCCCCCGGCUGCACAGA --..............----...........(((((-(.......((((.((...(((((((((......(((.(((....)))((....)))))(((((............))))))))))))))..)).)))).......(((..........))).)))))). ( -43.90, z-score = -3.14, R) >droYak2.chr2L 2176369 138 + 22324452 -CUUCAGUUACUCCUCCUCCCCUCCUCACGAUUGUG-CCCCUUUGGCAGUUGCACUGCGGCUGCAAUUACGCCAACGUCAUCGUGUUCGUACGGCGUGCAAUUUCUUCUAUGUGCACGUAGCUGCACUUAUCUGUACGGA-------------------------- -.....................(((..(((((.(((-(.......((((.....))))((((((......(((.(((....)))((....)))))(((((............)))))))))))))))..))).))..)))-------------------------- ( -35.60, z-score = -0.75, R) >droEre2.scaffold_4929 2237974 164 + 26641161 CUUUCAGGUACUCCUCA-CCCCUCCACACGAUUGCG-CCCUUUUGCCAGCUGCAUAGUGACUGCAAUUACGCCAACGUCAUCGUGUUCGUACGGCGUGCAAUUUCUUCUAUGUGCACGUAGCUGCACUUAUCGGCCCCUCCUGUCCGCCCUCCCUGGCUGCACAGA .....(((....)))..-...........((..(.(-((....(((.((((((.........((...((((...(((....)))...))))..))(((((............))))))))))))))......))))..))(((((.(((......))).).)))). ( -38.70, z-score = 0.26, R) >consensus __UUCAGCUACUCUUC____CCUCCUCACGACUGUG_CCCCUUUCGCAGCUGCAUUGCGGCUGCAAUUACGCCAACGUCAUCGUGUUCGUACGGCGUGCAAUUUCUUCUAUGUGCACGUAGCUGCACUUAUCUGCCCCUCCUGCCCCCACCCCC_GGCUGCACAGA ...............................(((((.........((((((((.........((...((((...(((....)))...))))..))(((((............))))))))))))).................(((..........)))..))))). (-26.29 = -27.84 + 1.55)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:10:32 2011