| Sequence ID | dm3.chr2L |
|---|---|
| Location | 231,514 – 231,576 |
| Length | 62 |
| Max. P | 0.721430 |
| Location | 231,514 – 231,576 |
|---|---|
| Length | 62 |
| Sequences | 12 |
| Columns | 66 |
| Reading direction | forward |
| Mean pairwise identity | 86.50 |
| Shannon entropy | 0.28368 |
| G+C content | 0.29986 |
| Mean single sequence MFE | -6.39 |
| Consensus MFE | -5.80 |
| Energy contribution | -5.80 |
| Covariance contribution | -0.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.00 |
| Structure conservation index | 0.91 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.50 |
| SVM RNA-class probability | 0.721430 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 231514 62 + 23011544 -AAAAGUAACAGAUUUGA-UA-UAGUAAAAGGCAUACAU-UUGCAUGGCAACAAAACAUACACACA -.................-..-..(((....(((.....-.))).((....)).....)))..... ( -6.30, z-score = -0.49, R) >droSim1.chr2L 235589 62 + 22036055 -AAAAGUAACAGAUUUGA-UA-UAGUAAAAGGCAUACAU-UUGCAUGGCAACAAAACAUACACACA -.................-..-..(((....(((.....-.))).((....)).....)))..... ( -6.30, z-score = -0.49, R) >droSec1.super_14 229474 62 + 2068291 -AAAAGUAACAGAUUUGA-UA-UAGUAAAAGGCAUACAU-UUGCAUGGCAACAAAACAUACACGCA -.................-..-..(((....(((.....-.))).((....)).....)))..... ( -6.30, z-score = 0.04, R) >droYak2.chr2L 224494 62 + 22324452 -AAAAGUAAAAGGUUUGA-UA-UAGUAAAAGGCAUACAU-UUGCAUGGCAACAAAACAUACACACA -....(((....((((..-..-.........(((.....-.))).((....)))))).)))..... ( -7.30, z-score = -0.61, R) >droEre2.scaffold_4929 277707 62 + 26641161 -AAAAGUAACAGAUUUGA-UA-UAGUAAAAGGCAUACAU-UUGCAUGGCAACAAAACAUACACACA -.................-..-..(((....(((.....-.))).((....)).....)))..... ( -6.30, z-score = -0.49, R) >droAna3.scaffold_12943 880194 62 - 5039921 -AAAAGAUAUAUACAAGA-UA-UAGUAAAAGGCAUACAA-UUGCAUGGCAACAAAACAUACACACA -......(((((.....)-))-))(((....(((.....-.))).((....)).....)))..... ( -6.70, z-score = -2.14, R) >dp4.chr4_group1 903025 63 - 5278887 -AAUAAUACAAGAUUCAAAUA-UAGUAAAAGGCAUACAA-UUGCAUGGCAACAAAACAUACACACA -....................-..(((....(((.....-.))).((....)).....)))..... ( -6.30, z-score = -1.69, R) >droPer1.super_5 834501 63 + 6813705 -AAUAAUACAAGAUUCAAAUA-UAGUAAAAGGCAUACAA-UUGCAUGGCAACAAAACAUACACACA -....................-..(((....(((.....-.))).((....)).....)))..... ( -6.30, z-score = -1.69, R) >droWil1.scaffold_180764 116777 66 + 3949147 AAAUGAUAACGAUUAUAUAUAAUAGUAAAAGGCAUACAAAUUGCAUGGCAACAAAACAUACACACA ........................(((....(((.......))).((....)).....)))..... ( -5.80, z-score = -0.77, R) >droVir3.scaffold_12963 11336402 58 - 20206255 -AAUCAUAAAA-GGU----UA-UAGUAAAAGGCAUACAA-UUGCAUGGCAACAAAACAUACACACA -((((......-)))----).-..(((....(((.....-.))).((....)).....)))..... ( -6.40, z-score = -1.26, R) >droMoj3.scaffold_6500 2460919 59 + 32352404 -AAUCAUAAAAAGGU----UA-UAGUAAAAGGCAUACAA-UUGCAUGGCAACAAAACAUACACACA -..............----..-..(((....(((.....-.))).((....)).....)))..... ( -6.30, z-score = -1.23, R) >droGri2.scaffold_15252 12920003 60 + 17193109 -AAUCAUAAAAGGUUA---UA-UAGUAAAAGGCAUACAA-UUGCAUGGCAACAAAACAUACACACA -((((......)))).---..-..(((....(((.....-.))).((....)).....)))..... ( -6.40, z-score = -1.13, R) >consensus _AAAAAUAAAAGAUUUGA_UA_UAGUAAAAGGCAUACAA_UUGCAUGGCAACAAAACAUACACACA ........................(((....(((.......))).((....)).....)))..... ( -5.80 = -5.80 + -0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:05:19 2011