| Sequence ID | dm3.chr2R |
|---|---|
| Location | 2,427,981 – 2,428,074 |
| Length | 93 |
| Max. P | 0.667834 |
| Location | 2,427,981 – 2,428,074 |
|---|---|
| Length | 93 |
| Sequences | 12 |
| Columns | 119 |
| Reading direction | forward |
| Mean pairwise identity | 81.89 |
| Shannon entropy | 0.34960 |
| G+C content | 0.36693 |
| Mean single sequence MFE | -21.62 |
| Consensus MFE | -14.91 |
| Energy contribution | -15.20 |
| Covariance contribution | 0.29 |
| Combinations/Pair | 1.22 |
| Mean z-score | -1.49 |
| Structure conservation index | 0.69 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.38 |
| SVM RNA-class probability | 0.667834 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 2427981 93 + 21146708 ------------------------CAAAGCUACAAGCAAUGAGAUUACAUCGCUGGCACUCGGCCA--AGAAAUUUAUAAAUCAGUUGAGCAAUUUGUGCUGAUUUAGUGACAUGAUAC ------------------------....((.....))......((((..((((((((.....))))--.........(((((((((.((....))...)))))))))))))..)))).. ( -20.70, z-score = -0.88, R) >droGri2.scaffold_15112 34436 91 + 5172618 ------------------------CAAAACUACAAGCAAUAAGAUUAUAUCGCUGGCAUUUGGCCA----AAUUUUAUAAAUCAGUAGAACAAUUUGUGCUGAUUUAGUGACAUGAUAC ------------------------...................(((((.((((((((.....))))----.......((((((((((.((....)).)))))))))))))).))))).. ( -22.30, z-score = -3.07, R) >droMoj3.scaffold_6496 1779377 91 - 26866924 ------------------------CAGAGCUUCAAGCAAUAAGAUUAAAUCUCUGGCAUUUAGCCA----GAAUUUAUAAAUCAGUUGAACAAUUUGUGCUGAUUUAGUGACAUGAUAC ------------------------....((.....))........(((((.((((((.....))))----)))))))(((((((((...((.....)))))))))))............ ( -20.30, z-score = -1.58, R) >droVir3.scaffold_12875 5005048 91 + 20611582 ------------------------CAAAACUACAAGCAAUAAGAUUAUAUCUCUGGCAUUUGGCCA----GAAUUUAUAAAUCAGUGGAACAAUUUGUGCUGAUUUAGUGACAUGAUAC ------------------------...................(((((.((((((((.....))))----)).....((((((((((.((....)).))))))))))..)).))))).. ( -21.40, z-score = -2.39, R) >droWil1.scaffold_180699 1657123 118 + 2593675 UUCAAUCGCUCUCUCUUUGAGUUGGAAAACUACUAGCAAUAAGAUUAUAUUGUUGGCAUUUGGCCAA-CAAAAUUUAUAAAUCAGUGGAACAAUUUGGACUGAUUUAGUGACAUGUUAU .....((((....((((...(((((.......)))))...)))).....((((((((.....)))))-)))......(((((((((............)))))))))))))........ ( -26.90, z-score = -1.85, R) >droPer1.super_34 76215 95 + 916997 ------------------------CAAAGCUACAAGCAAUGCGAUUAUAUCGCUGGCAUUUGGCCAACGAAAUUUUAUAAAUCAGUUGAGCAAUUUGUGCUGAUUUAGUGACAUGAUAC ------------------------....((.....))......(((((.((((((((.....))))...........(((((((((.((....))...))))))))))))).))))).. ( -22.40, z-score = -1.17, R) >dp4.Unknown_group_73 33687 95 - 34761 ------------------------CAAAGCUACAAGCAAUGCGAUUAUAUCGCUGGCAUUUGGCCAACGAAAUUUUAUAAAUCAGUUGAGCAAUUUGUGCUGAUUUAGUGACAUGAUAC ------------------------....((.....))......(((((.((((((((.....))))...........(((((((((.((....))...))))))))))))).))))).. ( -22.40, z-score = -1.17, R) >droAna3.scaffold_13266 1275440 94 - 19884421 ------------------------CGAAACUGCAAGCAAUGAGAUUAUCGGGCUGGCACUUGGCCAG-AAAAAUUUAUAAAUCAGUUGAGCAAUUUGUGCUGAUUUAGUGACAUGAUAC ------------------------.....................(((((..(((((.....)))))-.........(((((((((.((....))...)))))))))......))))). ( -19.90, z-score = -0.38, R) >droEre2.scaffold_4929 6531630 93 - 26641161 ------------------------CAGAGCUACAAGCAAUGAGAUUACAUCGCUGGCACUCGGCCA--AGAAAUUUAUAAAUCAGUUGAGCAAUUUGUGCUGAUUUAGUGACACGAUAC ------------------------((..((.....))..))........((((((((.....))))--.........(((((((((.((....))...)))))))))))))........ ( -19.80, z-score = -0.57, R) >droYak2.chr2L 15183480 72 + 22324452 ---------------------------------------------CAAGUCGCUGGCACUCGGCCA--AGAAAUUUAUAAAUCAGUUGAGCAAUUUGUGCUGAUUUAGUGACAUGAUAC ---------------------------------------------((.(((((((((.....))))--.........(((((((((.((....))...)))))))))))))).)).... ( -21.90, z-score = -3.04, R) >droSec1.super_1 97949 93 + 14215200 ------------------------CAAAGCUACAAGCAAUGAGAUUACAUCGCUGGCACUCGGCCA--AGAAAUUUAUAAAUCAGUUGAGCAAUUUGUGCUGAUUUAGUGACAUGAUAC ------------------------....((.....))......((((..((((((((.....))))--.........(((((((((.((....))...)))))))))))))..)))).. ( -20.70, z-score = -0.88, R) >droSim1.chr2R 1253892 93 + 19596830 ------------------------CAAAGCUACAAGCAAUGAGAUUACAUCGCUGGCACUCGGCCA--AGAAAUUUAUAAAUCAGUUGAGCAAUUUGUGCUGAUUUAGUGACAUGAUAC ------------------------....((.....))......((((..((((((((.....))))--.........(((((((((.((....))...)))))))))))))..)))).. ( -20.70, z-score = -0.88, R) >consensus ________________________CAAAGCUACAAGCAAUGAGAUUAUAUCGCUGGCACUUGGCCA__AGAAAUUUAUAAAUCAGUUGAGCAAUUUGUGCUGAUUUAGUGACAUGAUAC ...........................................((((..((((((((.....))))...........(((((((((...((.....)))))))))))))))..)))).. (-14.91 = -15.20 + 0.29)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:03:39 2011