| Sequence ID | dm3.chr2R |
|---|---|
| Location | 2,243,721 – 2,243,800 |
| Length | 79 |
| Max. P | 0.985938 |
| Location | 2,243,721 – 2,243,800 |
|---|---|
| Length | 79 |
| Sequences | 3 |
| Columns | 79 |
| Reading direction | reverse |
| Mean pairwise identity | 75.57 |
| Shannon entropy | 0.31385 |
| G+C content | 0.30547 |
| Mean single sequence MFE | -13.50 |
| Consensus MFE | -11.34 |
| Energy contribution | -11.57 |
| Covariance contribution | 0.23 |
| Combinations/Pair | 1.21 |
| Mean z-score | -2.26 |
| Structure conservation index | 0.84 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 2.22 |
| SVM RNA-class probability | 0.985938 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 2243721 79 - 21146708 CUCCAUUGCUUCUUAAUUUACUUUACUGUAGGUCUCAUUCGUAUCAAUUAUGUCAUGUACAGUAUAUUGGGACUCAUAU ......((..(((((((......(((((((.((..(((...........)))..)).))))))).)))))))..))... ( -13.40, z-score = -1.43, R) >droSim1.chr2R 1079979 63 - 19596830 ----------------UCUAUUUUACAGUGGGUCUCAUUCGUAUCAAUUAUGUCAUAUAUAAUACAGUGGGACAUAUAU ----------------.((((......))))((((((((.((((....(((((...)))))))))))))))))...... ( -12.00, z-score = -1.68, R) >droSec1.super_26 820058 63 - 826190 ----------------UCUAUUUUACAGUAGGUCUCAUUCGUAUCAAUUAUGUCAUAUAUAAUACAGUGGGACUUAUAU ----------------...........((((((((((((.((((....(((((...))))))))))))))))))))).. ( -15.10, z-score = -3.67, R) >consensus ________________UCUAUUUUACAGUAGGUCUCAUUCGUAUCAAUUAUGUCAUAUAUAAUACAGUGGGACUUAUAU ...........................((((((((((((.((((....(((.....)))..)))))))))))))))).. (-11.34 = -11.57 + 0.23)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:03:33 2011