| Sequence ID | dm3.chr2R |
|---|---|
| Location | 2,240,917 – 2,241,033 |
| Length | 116 |
| Max. P | 0.728147 |
| Location | 2,240,917 – 2,241,033 |
|---|---|
| Length | 116 |
| Sequences | 3 |
| Columns | 118 |
| Reading direction | reverse |
| Mean pairwise identity | 63.64 |
| Shannon entropy | 0.51213 |
| G+C content | 0.34757 |
| Mean single sequence MFE | -27.23 |
| Consensus MFE | -12.06 |
| Energy contribution | -11.63 |
| Covariance contribution | -0.42 |
| Combinations/Pair | 1.54 |
| Mean z-score | -1.73 |
| Structure conservation index | 0.44 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.52 |
| SVM RNA-class probability | 0.728147 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 2240917 116 - 21146708 CUACUUUACUGUAGGUCUCAUUCGUAUCAAUUAUGUCAUGUACAGUAUAUUGGGACUCAUAUACAUAUUUCUUACUACAACAGUAAGAU-GGAAAUAAA-CACAAAAAUGUUUAUAAG (((...(((((((.((..(((...........)))..)).)))))))...)))................(((((((.....))))))).-....(((((-((......)))))))... ( -20.70, z-score = -1.22, R) >droSim1.chr2R 1079925 116 - 19596830 CUAUUUUACAGUGGGUCUCAUUCGUAUCAAUUAUGUCAUAUAUAAUACAGUGGGACAUAUAUAC-UAUGUCCUACUACAAUAGUUAGGUAGAAAACACG-CACAAAAUUGGGUAUUAC ..........(((.((....(((.((((.(((((((...)))))))..(((((((((((.....-)))))))))))..........)))))))...)).-)))............... ( -25.20, z-score = -1.69, R) >droYak2.chrXh 155870 109 - 172766 CUGCGUUACAGUGGGUCUCAUACAUUUGUAUUAUGUCAUGCAUUCUACAGUGGGUCCUAUU----UAUGACCUACUGCAUUAUGAGACCAAGUGGGGUAUCGUAAGAGUGUGU----- .(((.((((....(((((((((....(((((......))))).....(((((((((.....----...)))))))))...)))))))))..)))).)))((....))......----- ( -35.80, z-score = -2.27, R) >consensus CUACUUUACAGUGGGUCUCAUUCGUAUCAAUUAUGUCAUGUAUAAUACAGUGGGACAUAUAUAC_UAUGUCCUACUACAAUAGUAAGAUAGGAAACAAA_CACAAAAAUGUGUAU_A_ ((((......)))).......................(((((((((.(((((((((............)))))))))..........((.....))..........)))))))))... (-12.06 = -11.63 + -0.42)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:03:32 2011