| Sequence ID | dm3.chr2R |
|---|---|
| Location | 2,230,911 – 2,230,980 |
| Length | 69 |
| Max. P | 0.888077 |
| Location | 2,230,911 – 2,230,980 |
|---|---|
| Length | 69 |
| Sequences | 4 |
| Columns | 69 |
| Reading direction | reverse |
| Mean pairwise identity | 78.50 |
| Shannon entropy | 0.35191 |
| G+C content | 0.32347 |
| Mean single sequence MFE | -13.57 |
| Consensus MFE | -9.43 |
| Energy contribution | -10.43 |
| Covariance contribution | 1.00 |
| Combinations/Pair | 1.31 |
| Mean z-score | -1.85 |
| Structure conservation index | 0.69 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.08 |
| SVM RNA-class probability | 0.888077 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 2230911 69 - 21146708 UUAUUCUAUUUUACAGUGGGUCUCAUUCGUAUCAAUUAUGUCAUGUACAGUAUAUUGGGACUCAUAUAC ...............((((((((((...((((....(((.....)))..))))..)))))))))).... ( -12.40, z-score = -1.27, R) >droSim1.chr2R 1079977 69 - 19596830 UUAUUCUAUUUUACAGUGGGUCUCAUUCGUAUCAAUUAUGUCAUAUAUAAUACAGUGGGACAUAUAUAC .....((((......))))((((((((.((((....(((((...)))))))))))))))))........ ( -12.00, z-score = -1.41, R) >droSec1.super_26 820056 69 - 826190 UUAUUCUAUUUUACAGUAGGUCUCAUUCGUAUCAAUUAUGUCAUAUAUAAUACAGUGGGACUUAUAUAC ...............((((((((((((.((((....(((((...))))))))))))))))))))).... ( -15.10, z-score = -3.23, R) >droYak2.chrXh 155918 61 - 172766 -----CUGCGUUACAGUGGGUCUCAUACAUUUGUAUUAUGUCAUGCAUUCUACAGUGGGUCCUAUU--- -----.........((((((.(((((.....((((..(((.....)))..))))))))).))))))--- ( -14.80, z-score = -1.50, R) >consensus UUAUUCUAUUUUACAGUGGGUCUCAUUCGUAUCAAUUAUGUCAUAUAUAAUACAGUGGGACUUAUAUAC ...............((((((((((((.((((.................)))))))))))))))).... ( -9.43 = -10.43 + 1.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:03:31 2011