| Sequence ID | dm3.chr2L |
|---|---|
| Location | 2,200,508 – 2,200,621 |
| Length | 113 |
| Max. P | 0.766813 |
| Location | 2,200,508 – 2,200,621 |
|---|---|
| Length | 113 |
| Sequences | 4 |
| Columns | 119 |
| Reading direction | reverse |
| Mean pairwise identity | 81.94 |
| Shannon entropy | 0.27968 |
| G+C content | 0.40657 |
| Mean single sequence MFE | -17.71 |
| Consensus MFE | -11.30 |
| Energy contribution | -12.05 |
| Covariance contribution | 0.75 |
| Combinations/Pair | 1.14 |
| Mean z-score | -2.13 |
| Structure conservation index | 0.64 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.63 |
| SVM RNA-class probability | 0.766813 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 2200508 113 - 23011544 AAUUUAACGUUUACUACCUUAUGGGGUAGUAUGGAAUAUCCUACAGCUACUACACGUUCCUGUACUCCAUAUCCAUAUCCAAAUC-----UU-CCCACCUUUUAGCGCUCUUUCUCUUU .......((((((((((((....))))))))((((......(((((..((.....))..))))).......))))..........-----..-..........))))............ ( -19.62, z-score = -2.14, R) >droEre2.scaffold_4929 2237707 115 - 26641161 UAUAUCACGUAUACUACUUCAC-AGGUAGUAUGGAAUAUCCCACAGCUACUGUCCAUUCCUGCACUCCAUAACCAUAUCCAAAUCCAAAUCUGCGCCCCGUUUAGCGCUCUUUCUU--- ........((((((((((....-.))))))))(((((.....((((...))))..))))).)).............................((((........))))........--- ( -18.30, z-score = -1.78, R) >droYak2.chr2L 2176092 110 - 22324452 AAUAUCACGUAUACUACCUUAU-AAGUAGAGUGAAAUAUCCUACAGCUACUGCCCGUUCCUGUACUCCACAUCCAAAUCCAAAUC-----UUCCCCACCUUUUGGCGCUCUUUCUU--- ......................-(((.((((((........(((((..((.....))..)))))..............(((((..-----..........)))))))))))..)))--- ( -14.80, z-score = -1.92, R) >droSim1.chr2L 2154440 112 - 22036055 AAUUUAACGUUUACUACCUUAU-GGGUAGUAUGGAAUAUCCUACAGCUACUACACGUUCCUGUACUCCAUAUCCAUAUCCAAAUC-----UU-CCCACCUUUUUGCGCUCUUUCUCUUU .......(((.(((((((....-.)))))))((((......(((((..((.....))..))))).......))))..........-----..-...........)))............ ( -18.12, z-score = -2.67, R) >consensus AAUAUAACGUAUACUACCUUAU_AGGUAGUAUGGAAUAUCCUACAGCUACUACACGUUCCUGUACUCCAUAUCCAUAUCCAAAUC_____UU_CCCACCUUUUAGCGCUCUUUCUC___ .......(((..(((((((....)))))))(((((......(((((..((.....))..))))).)))))..................................)))............ (-11.30 = -12.05 + 0.75)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:10:30 2011