| Sequence ID | dm3.chr2R |
|---|---|
| Location | 2,108,342 – 2,108,434 |
| Length | 92 |
| Max. P | 0.798179 |
| Location | 2,108,342 – 2,108,434 |
|---|---|
| Length | 92 |
| Sequences | 3 |
| Columns | 92 |
| Reading direction | forward |
| Mean pairwise identity | 75.36 |
| Shannon entropy | 0.35290 |
| G+C content | 0.32902 |
| Mean single sequence MFE | -16.72 |
| Consensus MFE | -14.84 |
| Energy contribution | -15.85 |
| Covariance contribution | 1.01 |
| Combinations/Pair | 1.12 |
| Mean z-score | -1.00 |
| Structure conservation index | 0.89 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.72 |
| SVM RNA-class probability | 0.798179 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 2108342 92 + 21146708 UCGUGUCCUGAAGCGCGCUAGAAAGUUUAAGAAAUUAUAAGAAUUUUACUAGAAUUCUAAAAUAUAUAUGAAUUUUGUAAUUUUCGGGACUU ....(((((((((.....((.((((((((..........(((((((.....)))))))..........)))))))).))..))))))))).. ( -19.15, z-score = -1.80, R) >droSim1.chr2R 1004825 74 + 19596830 UUCUGUCCCGGAGCGCGCUAGAAAGUUUA--------UAAGAAUUCCAGGAGAAUU----------UAUGAAUGUUAUAAUUUUCGGAACCU ....((.((((((.....(((...(((((--------(((..((((.....)))))----------))))))).)))....)))))).)).. ( -10.60, z-score = 0.97, R) >droSec1.super_26 750464 92 + 826190 UUCUGUCCCGGAGCGCGCUAGAAAGUUUAGUAAAAUAUAAGAAUCCCAAAAGAAUUCUAAAAUAUUUAUGAAUUUUGUAAUUUUCGGGACCU ....(((((((((.....((.((((((((...((((((.(((((.(.....).)))))...)))))).)))))))).))..))))))))).. ( -20.40, z-score = -2.18, R) >consensus UUCUGUCCCGGAGCGCGCUAGAAAGUUUA__AAA_UAUAAGAAUUCCAAAAGAAUUCUAAAAUAU_UAUGAAUUUUGUAAUUUUCGGGACCU ....(((((((((.....((.((((((((..........(((((((.....)))))))..........)))))))).))..))))))))).. (-14.84 = -15.85 + 1.01)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:03:23 2011