| Sequence ID | dm3.chr2R |
|---|---|
| Location | 2,101,704 – 2,101,782 |
| Length | 78 |
| Max. P | 0.837015 |
| Location | 2,101,704 – 2,101,782 |
|---|---|
| Length | 78 |
| Sequences | 3 |
| Columns | 91 |
| Reading direction | forward |
| Mean pairwise identity | 85.35 |
| Shannon entropy | 0.20182 |
| G+C content | 0.42743 |
| Mean single sequence MFE | -15.60 |
| Consensus MFE | -14.93 |
| Energy contribution | -14.93 |
| Covariance contribution | -0.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.17 |
| Structure conservation index | 0.96 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.86 |
| SVM RNA-class probability | 0.837015 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 2101704 78 + 21146708 UUAAGACAUCUGUGGUCCGUCCCCUGUUAGCUGCUAACAUGCUAACUCUCGGUCAGCUGUUCCAUCUUUUUUUUUCCA------------- ....((((.(((....(((......((((((((....)).))))))...))).))).)))).................------------- ( -15.70, z-score = -2.09, R) >droSec1.super_26 744414 89 + 826190 CUAAGACAUCUGGGGUCCGUCCUCUGUUAGCUGCUAACAUGCUAACUCUCGGUCAGCUGUUCCAUAUUUUUUU--CCACAUUUUAUUGUCA ....((((...((((.....)))).((((((((....)).))))))...(((....)))..............--...........)))). ( -15.70, z-score = -0.70, R) >droSim1.chr2R 998019 91 + 19596830 CUAAGACAUCUGGGGUCCGUCCUCUGUUAGCUGCUAAAAUGCUAACUCUCGGUCAGCUGUUCCAUAUUUUUUUUUCCACAUUUUAUUGUCA ....((((...((((.....)))).((((((.........))))))...(((....)))...........................)))). ( -15.40, z-score = -0.73, R) >consensus CUAAGACAUCUGGGGUCCGUCCUCUGUUAGCUGCUAACAUGCUAACUCUCGGUCAGCUGUUCCAUAUUUUUUUUUCCACAUUUUAUUGUCA ....((((.(((....(((......((((((.........))))))...))).))).)))).............................. (-14.93 = -14.93 + -0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:03:22 2011