| Sequence ID | dm3.chr2R |
|---|---|
| Location | 2,099,589 – 2,099,684 |
| Length | 95 |
| Max. P | 0.594417 |
| Location | 2,099,589 – 2,099,684 |
|---|---|
| Length | 95 |
| Sequences | 12 |
| Columns | 101 |
| Reading direction | reverse |
| Mean pairwise identity | 66.97 |
| Shannon entropy | 0.71843 |
| G+C content | 0.52797 |
| Mean single sequence MFE | -22.63 |
| Consensus MFE | -11.08 |
| Energy contribution | -10.71 |
| Covariance contribution | -0.37 |
| Combinations/Pair | 1.46 |
| Mean z-score | -0.43 |
| Structure conservation index | 0.49 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.21 |
| SVM RNA-class probability | 0.594417 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 2099589 95 - 21146708 -----UUACGAUUAUCCGAACUUC-CUUCUUCCAUGUACAGGCUUGCGACCAUCGCGAAGCCAACUCUUUGUGGGCAUCGGUCACCAACAGCUAGCCAUCC -----...((......))......-...............((((.((((((.((((((((......)))))))).....)))).......)).)))).... ( -19.01, z-score = 0.05, R) >droGri2.scaffold_15245 18179748 90 + 18325388 -------AUGACAAUCUCGUCU---CGUCAUCC-UGCCCAGGUUUGCGUCCAUCGCGCAGUCAACUGUUUGUGGGCAUUGGCCAUCAGCAGCUGGCCAUUC -------(((((..........---.)))))..-((((((.(...(((.....)))((((....)))).).)))))).((((((.(....).))))))... ( -28.40, z-score = -1.32, R) >droMoj3.scaffold_6496 1642417 101 + 26866924 UUUGCGCCUCUCUACCUCUCUCACUCUCACAUACAUUGUAGGUCUUCGUCCGUCCCGGAGUCAGCUCUUUGUGGGCAUUGGAUACCAGCAGCUGGCCGUAC ..((((((.((((...............(((.....))).(((.((((...(((((((((......))))).))))..)))).))))).))..)).)))). ( -22.30, z-score = 0.84, R) >droVir3.scaffold_12875 4853953 84 - 20611582 --------------GCAGCCCUUUGCUUCUCCUGU---CAGGCCUGCGUCCCUCGCGCAGUCAGCUCUUCGUGGGCAUUGGCUAUCAGCAGCUGGCCAUAC --------------...(((..(((((......((---(((((.(((((.....)))))))).((((.....))))..))))....)))))..)))..... ( -27.00, z-score = 0.08, R) >droWil1.scaffold_180700 806625 90 + 6630534 ---------UCUAAUCUAG--CUAAUGUCAAUAUUUUUCAGGCCUACGUCCAACGCGAAGCCAACUCUUUGUGGGCAUUGGCCAUCAGCAAUUGGCCAUUC ---------..........--..((((((...........(((....)))...(((((((......)))))))))))))(((((........))))).... ( -21.70, z-score = -1.24, R) >droPer1.super_73 233696 84 + 267513 -----------------UAAAUCAAUAUGUGUACUCUGCAGGUCUGCGUCCUUCGCGGAGCCAGCUGUUUGUCGGCAUUGGACAGCAGCAGCUGGCGAUCC -----------------...(((...................((((((.....))))))((((((((((((((.......))))..))))))))))))).. ( -31.00, z-score = -1.63, R) >dp4.chr3 18022948 84 - 19779522 -----------------UAAAUCAAUAUGUGUACUCUGCAGGUCUGCGUCCUUCGCGGAGCCAACUGUUUGUGGGCAUUGGACAGCAGCAGCUGGCGAUCC -----------------....((...((((.(((...((((.((((((.....)))))).....))))..))).))))..))((((....))))....... ( -25.20, z-score = 0.07, R) >droAna3.scaffold_13266 1179537 94 + 19884421 -------UUUUCAAAUAAUUACUUAUUUCUUCAUAUUGCAGGACUGCGACCGUCGCGCUGCCAGCUUUUUGUCGGCAUCGGGCAUCAGCAACUGGCCAUUC -------...............................(((...(((....(((.((.((((.((.....)).)))).)))))....))).)))....... ( -19.10, z-score = 0.41, R) >droEre2.scaffold_4929 6411193 96 + 26641161 -----UUACGCUAAUCCAAACUCCACUUGCUCCAUGUACAGGCCUGCGACCAUCACGAAGCCAACUCUUUGUGGGCAUCGGUCACCAACAGCUAGCCAUCC -----....((((...............((.((.......))...))((((.((((((((......)))))))).....)))).........))))..... ( -18.60, z-score = 0.07, R) >droYak2.chr2L 1948630 96 + 22324452 -----UUACGCUAAUCCAAACUCUACUUCUUCCAUGUACAGGCCUGCGACCAUCACGAAGCCAACUCUUUGUGGGCAUCGGUCACCAACAGCUAGCCAUUC -----...................................(((..((((((.((((((((......)))))))).....)))).......))..))).... ( -18.01, z-score = -0.46, R) >droSec1.super_26 742300 96 - 826190 -----UUACGCUUAUCCUAACUUCACUUCUUCCAUGUACAGGCCUGCGACCAUCGCGAAGCCAACUCUUUGUGGGCAUCGGCCACCAACAGCUAGCCAUCC -----....(((............((.........))...((((.(((.....)))((.(((.((.....)).))).))))))......)))......... ( -20.90, z-score = -0.84, R) >droSim1.chr2R 995903 96 - 19596830 -----UUACGCUUCUCCAAACUUCACUUCUUCCAUUUACAGGCCUGCGACCAUCGCGAAGCCAACUCUUUGUGGGCAUCGGCCACCAACAGCUAGCCAUCC -----...................................((((.(((.....)))((.(((.((.....)).))).)))))).................. ( -20.30, z-score = -1.18, R) >consensus _______ACGCUAAUCCAAACUUCACUUCUUCCAUGUACAGGCCUGCGACCAUCGCGAAGCCAACUCUUUGUGGGCAUCGGCCACCAGCAGCUGGCCAUCC ........................................(((..((........(((.(((.((.....)).))).)))..........))..))).... (-11.08 = -10.71 + -0.37)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:03:21 2011