| Sequence ID | dm3.chr2R |
|---|---|
| Location | 2,029,664 – 2,029,728 |
| Length | 64 |
| Max. P | 0.500000 |
| Location | 2,029,664 – 2,029,728 |
|---|---|
| Length | 64 |
| Sequences | 13 |
| Columns | 74 |
| Reading direction | reverse |
| Mean pairwise identity | 94.50 |
| Shannon entropy | 0.12190 |
| G+C content | 0.53762 |
| Mean single sequence MFE | -17.53 |
| Consensus MFE | -16.10 |
| Energy contribution | -16.10 |
| Covariance contribution | -0.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.11 |
| Structure conservation index | 0.92 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.01 |
| SVM RNA-class probability | 0.500000 |
| Prediction | OTHER |
Download alignment: ClustalW | MAF
>dm3.chr2R 2029664 64 - 21146708 GUCGAACCUGGAAUCUUCUGAUCCGUAGUCAGACGCGUUAUCCAUUGCGCCACAGGACCGGUUG---------- .(((..((((......((((((.....)))))).((((........))))..))))..)))...---------- ( -17.50, z-score = -0.79, R) >droSim1.chr2R 925132 64 - 19596830 GUCGAACCUGGAAUCUUCUGAUCCGUAGUCAGACGCGUUAUCCAUUGCGCCACAGGACCGGUUG---------- .(((..((((......((((((.....)))))).((((........))))..))))..)))...---------- ( -17.50, z-score = -0.79, R) >droSec1.super_26 672782 64 - 826190 GUCGAACCUGGAAUCUUCUGAUCCGUAGUCAGACGCGUUAUCCAUUGCGCCACAGGACCGGUUG---------- .(((..((((......((((((.....)))))).((((........))))..))))..)))...---------- ( -17.50, z-score = -0.79, R) >droYak2.chr2L 1877007 64 + 22324452 GUCGAACCUGGAAUCUUCUGAUCCGUAGUCAGACGCGUUAUCCAUUGCGCCACAGGACCAGUUG---------- ......((((......((((((.....)))))).((((........))))..))))........---------- ( -16.10, z-score = -0.88, R) >droEre2.scaffold_4929 6337621 64 + 26641161 GUCGAACCUGGAAUCUUCUGAUCCGUAGUCAGACGCGUUAUCCAUUGCGCCACAGGACCGGCUG---------- ((((..((((......((((((.....)))))).((((........))))..))))..))))..---------- ( -20.90, z-score = -1.95, R) >droAna3.scaffold_13266 1117111 63 + 19884421 -UCGAACCUGGAAUCUUCUGAUCCGUAGUCAGACGCGUUAUCCAUUGCGCCACAGGACCGGUUG---------- -(((..((((......((((((.....)))))).((((........))))..))))..)))...---------- ( -17.30, z-score = -0.98, R) >dp4.chr3 17953790 64 - 19779522 GUCGAACCUGGAAUCUUCUGAUCCGUAGUCAGACGCGUUAUCCAUUGCGCCACAGGACCGGUUG---------- .(((..((((......((((((.....)))))).((((........))))..))))..)))...---------- ( -17.50, z-score = -0.79, R) >droPer1.super_73 164900 64 + 267513 GUCGAACCUGGAAUCUUCUGAUCCGUAGUCAGACGCGUUAUCCAUUGCGCCACAGGACCGGUUG---------- .(((..((((......((((((.....)))))).((((........))))..))))..)))...---------- ( -17.50, z-score = -0.79, R) >droWil1.scaffold_180700 689312 64 + 6630534 GUCGAACCUGGAAUCUUCUGAUCCGUAGUCAGACGCGUUAUCCAUUGCGCCACAGGACCACUUG---------- ......((((......((((((.....)))))).((((........))))..))))........---------- ( -16.10, z-score = -1.15, R) >droVir3.scaffold_12875 4746118 61 - 20611582 GUCGAACCUGGAAUCUUCUGAUCCGUAGUCAGACGCGUUAUCCAUUGCGCCACAGGACCGA------------- .(((..((((......((((((.....)))))).((((........))))..))))..)))------------- ( -17.80, z-score = -1.46, R) >droMoj3.scaffold_6496 25281210 74 - 26866924 GUCGAACCUGGAAUCUUCUGAUCCGUAGUCAGACGCGUUAUCCAUUGCGCCACAGGACCGCAUAAUACAUUUUG (.((..((((......((((((.....)))))).((((........))))..))))..)))............. ( -17.00, z-score = -1.19, R) >droGri2.scaffold_15245 18089620 64 + 18325388 GUCGAACCUGGAAUCUUCUGAUCCGUAGUCAGACGCGUUAUCCAUUGCGCCACAGGACCGAUUA---------- ((((..((((......((((((.....)))))).((((........))))..))))..))))..---------- ( -19.10, z-score = -2.01, R) >anoGam1.chr2R 51436556 64 + 62725911 GUCGAACCUGGAAUCUUCUGAUCCGUAGUCAGACGCGUUAUCCAUUGCGCCACAGGACCCGUUG---------- ......((((......((((((.....)))))).((((........))))..))))........---------- ( -16.10, z-score = -0.86, R) >consensus GUCGAACCUGGAAUCUUCUGAUCCGUAGUCAGACGCGUUAUCCAUUGCGCCACAGGACCGGUUG__________ ......((((......((((((.....)))))).((((........))))..)))).................. (-16.10 = -16.10 + -0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:03:01 2011