| Sequence ID | dm3.chr2L |
|---|---|
| Location | 2,184,663 – 2,184,759 |
| Length | 96 |
| Max. P | 0.690062 |
| Location | 2,184,663 – 2,184,759 |
|---|---|
| Length | 96 |
| Sequences | 3 |
| Columns | 96 |
| Reading direction | forward |
| Mean pairwise identity | 97.92 |
| Shannon entropy | 0.02870 |
| G+C content | 0.50694 |
| Mean single sequence MFE | -26.90 |
| Consensus MFE | -26.27 |
| Energy contribution | -25.83 |
| Covariance contribution | -0.44 |
| Combinations/Pair | 1.07 |
| Mean z-score | -1.17 |
| Structure conservation index | 0.98 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.42 |
| SVM RNA-class probability | 0.690062 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 2184663 96 + 23011544 CUCGCUGCACAGAAGACUGGGCUCCAAUGUGAAGUUGGGAGCUUGGAGAAAGAGGGAGACAGCAUCCGGAAUCGGAAUGCCAAAAAUGAAAAGAAA (((.((.(((((....)))(((((((((.....))).)))))))).))...)))(....).(((((((....))).))))................ ( -25.70, z-score = -1.09, R) >droSim1.chr2L 2137837 96 + 22036055 CUCGCUGCACAGAAGACUGGGCUCCAAUGCGAAGUUGGGGGCUUGGAGAAAGAGGGAGACAGCAUCCGGAAUCGGAAUGCCAAAAAUGAAAAGAAA (((.((.(((((....)))(.(((((((.....))))))).).)).))...)))(....).(((((((....))).))))................ ( -26.40, z-score = -0.91, R) >droSec1.super_121 57211 96 + 59987 CUCGCUGCACAGAAGACUGGGCUCCAACGCGAAGUUGGGGGCUUGGAGAAAGAGGGAGACAGCAUCCGGAAUCGGAAUGCCAAAAAUGAAAAGAAA (((.((.(((((....)))(.(((((((.....))))))).).)).))...)))(....).(((((((....))).))))................ ( -28.60, z-score = -1.50, R) >consensus CUCGCUGCACAGAAGACUGGGCUCCAAUGCGAAGUUGGGGGCUUGGAGAAAGAGGGAGACAGCAUCCGGAAUCGGAAUGCCAAAAAUGAAAAGAAA (((.((.(((((....)))(((((((((.....))).)))))))).))...)))(....).(((((((....))).))))................ (-26.27 = -25.83 + -0.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:10:28 2011