Locus 3067

Sequence ID	dm3.chr2R
Location	2,012,514 – 2,012,565
Length	51
Max. P	0.998967

overview

Window 4

Location	2,012,514 – 2,012,565
Length	51
Sequences	6
Columns	53
Reading direction	reverse
Mean pairwise identity	85.16
Shannon entropy	0.28441
G+C content	0.38907
Mean single sequence MFE	-13.53
Consensus MFE	-11.72
Energy contribution	-12.38
Covariance contribution	0.67
Combinations/Pair	1.00
Mean z-score	-3.73
Structure conservation index	0.87
Background model	dinucleotide
Decision model	sequence based alignment quality
SVM decision value	3.57
SVM RNA-class probability	0.998967
Prediction	RNA

Download alignment: ClustalW | MAF

>dm3.chr2R 2012514 51 - 21146708
--AUUCAGUAUACAAAAUAAUGAUUCACCUGUAAGUCGCAGAGUGAGUCAAAC
--..................((((((((((((.....)))).))))))))... ( -14.70, z-score =  -4.62, R)
>droSim1.chr2R 909386 51 - 19596830
--AUCCAGUAUACGAAAUAAUGAUUCACCUGUAAGUCGCAGAGUGAGUCAAAC
--..................((((((((((((.....)))).))))))))... ( -14.70, z-score =  -4.38, R)
>droSec1.super_26 655535 51 - 826190
--AUCCAGUAUACGAAAUAAUGAUUCACCUGUAAGUCGCAGAGUGAGUCAAAC
--..................((((((((((((.....)))).))))))))... ( -14.70, z-score =  -4.38, R)
>droYak2.chr2L 1858135 51 + 22324452
--AUCCAGUAUACAAAAUAAUGAUUCACCUGUAAAUCGCAGAGUGAGUCAAUC
--..................((((((((((((.....)))).))))))))... ( -14.70, z-score =  -5.38, R)
>droEre2.scaffold_4929 6319173 51 + 26641161
--AUCCAGAAUACAAAAUAAUGAUUCACCUGUAAGUCGCAGAGUGACUCAAAC
--..................(((.((((((((.....)))).)))).)))... ( -11.00, z-score =  -2.93, R)
>droAna3.scaffold_13266 1099674 53 + 19884421
ACAUACAGCGCUCAAAGUAAUGAUUCACCUGUAGGGGGACGGAUGAGUCAAGA
....................(((((((.((((......)))).)))))))... ( -11.40, z-score =  -0.69, R)
>consensus
__AUCCAGUAUACAAAAUAAUGAUUCACCUGUAAGUCGCAGAGUGAGUCAAAC
....................((((((((((((.....)))).))))))))... (-11.72 = -12.38 +   0.67)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:02:58 2011