Locus 3066

Sequence ID dm3.chr2R
Location 2,004,773 – 2,004,880
Length 107
Max. P 0.943180
window4203

overview

Window 3

Location 2,004,773 – 2,004,880
Length 107
Sequences 3
Columns 120
Reading direction reverse
Mean pairwise identity 77.43
Shannon entropy 0.30746
G+C content 0.42395
Mean single sequence MFE -32.07
Consensus MFE -25.55
Energy contribution -25.67
Covariance contribution 0.11
Combinations/Pair 1.04
Mean z-score -1.92
Structure conservation index 0.80
Background model dinucleotide
Decision model sequence based alignment quality
SVM decision value 1.49
SVM RNA-class probability 0.943180
Prediction RNA

Download alignment: ClustalW | MAF

>dm3.chr2R 2004773 107 - 21146708
GGCAUACAUAC----AGUGACCUGAAAACUUGAAUACGGGUUGUUCAUUGUGUGUGUGUGUAUUGAUCACUGAAUUCGGUUCUUAGCCGUACUA---GUAGUC------AUCCAUAGGGC
.((((((((((----(((((......((((((....))))))..)))))))))))))))....((((.((((....((((.....))))...))---)).)))------).......... ( -33.40, z-score =  -2.05, R)
>droSim1.chr2R 901706 120 - 19596830
GGCAUACAUACAAUAAAUGACCUGAAAACUUAAAUACGGGUUGUUCAUAGUGUGUGUGUGUGUUGAGCACUGGAUUCGGUUCUUAGCCCUACUACAAGCAGUCUAACUUACCCGUAGGGC
.(((((((((((...((..(((((............)))))..)).....)))))))))))..((((.((((....)))).))))(((((((...(((........)))....))))))) ( -37.80, z-score =  -2.25, R)
>droSec1.super_26 647921 93 - 826190
GGCAUACAUAC----AAUGACCUGAAAACUUGAAUACGGGUUGUUCAUAGUGUGUGUUUGUGUUGAGCACUGAAUUCGGUUCUUAGCCCUACUACAA-----------------------
.(((.((((((----(......((((((((((....)))))).))))...))))))).)))((((((.((((....)))).))))))..........----------------------- ( -25.00, z-score =  -1.46, R)
>consensus
GGCAUACAUAC____AAUGACCUGAAAACUUGAAUACGGGUUGUUCAUAGUGUGUGUGUGUGUUGAGCACUGAAUUCGGUUCUUAGCCCUACUACAAG_AGUC______A_CC_UAGGGC
(((((((((((....((..(((((............)))))..))....))))))))......((((.((((....)))).)))))))................................ (-25.55 = -25.67 +   0.11)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:02:57 2011