| Sequence ID | dm3.chr2R |
|---|---|
| Location | 1,992,584 – 1,992,678 |
| Length | 94 |
| Max. P | 0.888164 |
| Location | 1,992,584 – 1,992,678 |
|---|---|
| Length | 94 |
| Sequences | 4 |
| Columns | 98 |
| Reading direction | reverse |
| Mean pairwise identity | 82.39 |
| Shannon entropy | 0.26963 |
| G+C content | 0.41435 |
| Mean single sequence MFE | -24.60 |
| Consensus MFE | -20.10 |
| Energy contribution | -20.48 |
| Covariance contribution | 0.37 |
| Combinations/Pair | 1.18 |
| Mean z-score | -1.75 |
| Structure conservation index | 0.82 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.08 |
| SVM RNA-class probability | 0.888164 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 1992584 94 - 21146708 AAAGCAAAUUGUAAACAAAUCCAGUGCCUCGCACACGAGUGCAUCGUUACACGGGGCUCUUUUUGUGUGUAUGAUGCACAUAUGUACAUAAAUG---- .........((((..........((((...))))....((((((((((((((((((....))))))))).))))))))).....))))......---- ( -26.20, z-score = -1.59, R) >droEre2.scaffold_4929 6299028 86 + 26641161 AAAGCAAAUUGUAAACAAAUCCAGUGCCUCGCACACGAAUGCAACAUUACACGGCACUCUUUUUGUGUAUAUGGUGCACAUAAAUG------------ ...(((...((((.(((((...(((((((((....))).((........)).))))))...))))).))))...))).........------------ ( -19.80, z-score = -1.30, R) >droSim1.chr2R 889360 98 - 19596830 AAAGCAAAUUGUAAACAAAUCCAGUGCCUCGCACACGAGUGCAUCGUUACACGGGGCUCUUUUUGUGUGCAUGAUGCACAUAUGUAUGUACAUGAAUG .........((((.(((......((((...))))....((((((((((((((((((....))))))))).)))))))))...)))...))))...... ( -27.60, z-score = -0.96, R) >droYak2.chr2L 1838769 86 + 22324452 AAAGCUAAUUGUAAACAAAUCCAGUGCCUCGCACACGAAUGCAACAUUACACGAGGCGCUUUUUGUGUACAUGAUGCACAUAAACG------------ ...((....((((.(((((...(((((((((......((((...))))...))))))))).))))).))))....)).........------------ ( -24.80, z-score = -3.12, R) >consensus AAAGCAAAUUGUAAACAAAUCCAGUGCCUCGCACACGAAUGCAACAUUACACGGGGCUCUUUUUGUGUACAUGAUGCACAUAAAUA____________ .......................((((...))))....((((((((((((((((((....))))))))).)))))))))................... (-20.10 = -20.48 + 0.37)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:02:56 2011