| Sequence ID | dm3.chr2R |
|---|---|
| Location | 1,956,990 – 1,957,097 |
| Length | 107 |
| Max. P | 0.913338 |
| Location | 1,956,990 – 1,957,097 |
|---|---|
| Length | 107 |
| Sequences | 5 |
| Columns | 109 |
| Reading direction | reverse |
| Mean pairwise identity | 91.70 |
| Shannon entropy | 0.14527 |
| G+C content | 0.55187 |
| Mean single sequence MFE | -39.32 |
| Consensus MFE | -33.70 |
| Energy contribution | -33.98 |
| Covariance contribution | 0.28 |
| Combinations/Pair | 1.13 |
| Mean z-score | -2.10 |
| Structure conservation index | 0.86 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.23 |
| SVM RNA-class probability | 0.913338 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 1956990 107 - 21146708 GCGAUGGACAUCGCCAUCGCUGUUCCAAAUCGGAGCCUAGUUGCCUUGCGAAUCAACGCCGCAUUUGCGGCAAUCGCCGUUGGUAG--UCGCAUUUACCUUUGACGGCA (((((((......))))))).(((((.....)))))...((((..........))))(((((....)))))....(((((((((((--......)))))...)))))). ( -43.10, z-score = -2.95, R) >droSim1.chr2R 859192 106 - 19596830 GCGAUGGACAUCGCCAUCGCUGUUCCAAAUCGGAGCCUAGUUGCC-UGCGAAUCAACGCCGCAUUUGCGGCUGUAGCCGGUGGUAG--UCGCAUUUACCUUUGACGGCA (((((((......))))))).(((((.....)))))...((((..-.......))))(((((....)))))....((((..(((((--......))))).....)))). ( -40.90, z-score = -1.75, R) >droSec1.super_26 599074 106 - 826190 GCGAUGGACAUCGCCAUCGCUGUUCCAAAUCGGAGCCUAGUUGCC-UGCGAAUCAACGCCGCAUUUGCGGCUGUAGCCGGUGGUAG--UCGCAUUUACCUUUGACGGCA (((((((......))))))).(((((.....)))))...((((..-.......))))(((((....)))))....((((..(((((--......))))).....)))). ( -40.90, z-score = -1.75, R) >droYak2.chr2L 1792045 108 + 22324452 GCGAUGGACAUCGCCAUUGCUGUUCUAAAUCGAAGCCUAGUUGCC-UGCGAAUCAACGUCGCCCUUGCGGCUAUACCCAGUGGUAGUCUCGCAUUUACCUUUGACGGCA (((((((......)))))))..............((((((((((.-.((((.......))))....)))))))....(((.(((((........))))).)))..))). ( -32.10, z-score = -1.03, R) >droEre2.scaffold_4929 6268385 104 + 26641161 GCGAUGGACAUCGCCAUUGCCGCUCCAAAUCGGAGCCUAGUUGAC-UGCGAAUCAACGCCGCAUUUGCGGCUAUACCCG--GGUAU--UCGCAUUUACCUUUGACGGCA (((((....)))))...(((((((((.....)))))..((.(((.-((((((.....(((((....)))))..(((...--.))))--))))).))).)).....)))) ( -39.60, z-score = -3.01, R) >consensus GCGAUGGACAUCGCCAUCGCUGUUCCAAAUCGGAGCCUAGUUGCC_UGCGAAUCAACGCCGCAUUUGCGGCUAUAGCCGGUGGUAG__UCGCAUUUACCUUUGACGGCA (((((((......))))))).(((((.....)))))...((((..........))))(((((....)))))....((((..(((((........))))).....)))). (-33.70 = -33.98 + 0.28)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:02:56 2011