| Sequence ID | dm3.chr2R |
|---|---|
| Location | 1,946,344 – 1,946,450 |
| Length | 106 |
| Max. P | 0.594344 |
| Location | 1,946,344 – 1,946,450 |
|---|---|
| Length | 106 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 74.22 |
| Shannon entropy | 0.45745 |
| G+C content | 0.56761 |
| Mean single sequence MFE | -38.23 |
| Consensus MFE | -26.98 |
| Energy contribution | -28.32 |
| Covariance contribution | 1.35 |
| Combinations/Pair | 1.47 |
| Mean z-score | -0.82 |
| Structure conservation index | 0.71 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.21 |
| SVM RNA-class probability | 0.594344 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 1946344 106 + 21146708 CUGGGCACAGUAGUGCGGGUGGGCGAGUCCGUCAGAAGCGUAUC-AUUGGACUUGCUCAUAUAGGGAUUUUCCUCAUCUACCGCCUGGGAGCAGGAGGAUGUCAACG------------- (((.((((....))))..(((((((((((((...((......))-..))))))))))))).))).(((..(((((..((.((.....))))...))))).)))....------------- ( -37.70, z-score = -1.23, R) >droAna3.scaffold_13266 1036410 118 - 19884421 CUGGGAACUGUAAAAGCAGUUGGAACGUCGGAAAUAAAGGUAUCCGUUGAAUGUGUAUG-GUAGGGAAUCGUCAGCCUGGUCACUUGGGAGGAACCC-AUCUUAGCUAGGUCGGUGGGUG (((..((((((....))))))....((.((((.((....)).)))).))..........-.)))....((..(.(((((((....((((.....)))-).....))))))).)..))... ( -27.80, z-score = 1.07, R) >droEre2.scaffold_4929 6257485 106 - 26641161 CUGGGCACAGUGGUGCGGAUGGGCACGUCCGUCAGAAGCGUAUC-AUUGGACUUGCUCAUAUAGGGAUUCUCCUCACCUGCGGUUUGGGAGCAGGAGGAUGCCAGCG------------- .((((((((((((((((((((((....)))))).....))))))-))))....))))))....((.(((((((((.(((.......))).).)))))))).))....------------- ( -42.60, z-score = -1.83, R) >droYak2.chr2L 1781102 106 - 22324452 CUGGGCACAGCAGUGCGGAUGACCGAGUCCGUCAAAAGCGUAUC-AUUGGACUUGCUCAUAUAGGGAUUUUCCUCACCUACCGCCUGAGAGCAGGAGGAUGGCAGCG------------- (((.((((....))))((((((.((((((((.............-..)))))))).))))...(((.....)))..))..((.((((....)))).))....)))..------------- ( -31.56, z-score = 0.32, R) >droSec1.super_26 588506 106 + 826190 CUGGGCACAGUAGUGCGGAUGGGCGAGUCCGUCAGAAGCUUGUC-AUUGGACUUGCUCAUGUAGGGAUUCUCCUCGCCUACCGCCUGGGAGCAGGAGGAUGUCAGCG------------- ....((((....))))..(((((((((((((.(((....)))..-..)))))))))))))((.((.(((((((((.((((.....)))).).)))))))).)).)).------------- ( -43.70, z-score = -1.43, R) >droSim1.chr2R 848552 106 + 19596830 CUGGGCACAGUAGUGCGGAUGGGCGAGUCCGUCAGAAGCGUGUC-AUUGGACUUGCUCAUGUAGGGAUUCUCCUCGCCCACCGCCUGGGAGCAGGAGGAUGUCAGCG------------- ....((((....))))..(((((((((((((...((......))-..)))))))))))))((.((.(((((((((.((((.....)))).).)))))))).)).)).------------- ( -46.00, z-score = -1.83, R) >consensus CUGGGCACAGUAGUGCGGAUGGGCGAGUCCGUCAGAAGCGUAUC_AUUGGACUUGCUCAUAUAGGGAUUCUCCUCACCUACCGCCUGGGAGCAGGAGGAUGUCAGCG_____________ ....((((....))))..(((((((((((((................)))))))))))))...((.(((((((((.((((.....)))).).)))))))).))................. (-26.98 = -28.32 + 1.35)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:02:55 2011