| Sequence ID | dm3.chr2R |
|---|---|
| Location | 1,946,196 – 1,946,304 |
| Length | 108 |
| Max. P | 0.513968 |
| Location | 1,946,196 – 1,946,304 |
|---|---|
| Length | 108 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 80.95 |
| Shannon entropy | 0.34011 |
| G+C content | 0.53040 |
| Mean single sequence MFE | -26.23 |
| Consensus MFE | -15.33 |
| Energy contribution | -16.28 |
| Covariance contribution | 0.94 |
| Combinations/Pair | 1.11 |
| Mean z-score | -1.77 |
| Structure conservation index | 0.58 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.04 |
| SVM RNA-class probability | 0.513968 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 1946196 108 - 21146708 UCAUUCAAUAACACGAACUACGACCUUUCCAACCUCCUCUCUGACAUCACCCCUUUGACUGGCUACACGCCA--------GUGGGUCU----CACUGAGGAGGCUGACUACCGAACAGAC ...(((.......((.....)).......((.(((((((..(((....((((.....((((((.....))))--------)))))).)----))..))))))).))......)))..... ( -30.60, z-score = -3.59, R) >droAna3.scaffold_13266 1036250 120 + 19884421 UCGUUCAACCCAACAAAAUACGAAGUGACCAGCCUCCUCUCCGAUGUCACCCCCUUAACAGGGUACACUCCAAACUCAGCGCAGGCUCAGAGCACCGAAGAUGACGACUAUCUAGGCGAA (((((...............((..((....((((((((....(((((.((((........))))))).)).......)).).)))))....))..)).(((((.....))))).))))). ( -20.20, z-score = 1.29, R) >droEre2.scaffold_4929 6257337 108 + 26641161 UCAUUCAACAACACGAACUACGACCUUUACAACCUCCUCUCUGACAUCACCCCGCUAACUGGCUACACGCCC--------GUGGGUCU----CACUGAGGAGGCGGACUACCGUUCCGAC ..............((((..............(((((((..(((....((((((......(((.....))))--------).)))).)----))..))))))).((....)))))).... ( -28.50, z-score = -2.42, R) >droYak2.chr2L 1780954 108 + 22324452 UCAUUCAAUAACACGAACUACGACCUUUACAACCUCCUCUCUGACAUCACCCCUCUGACUGGCUACACGCCC--------GUGGGUCU----CACGGAGGAUGCUGACUACCGUACCGAC .............((...((((.......((.(.((((((.(((....((((.....((.(((.....))).--------)))))).)----)).)))))).).)).....)))).)).. ( -21.70, z-score = -0.76, R) >droSec1.super_26 588358 108 - 826190 UCAUUCAAUAACACGAACUACGACCUUUCCAACCUCCUCUCUGACAUCACCCCUCUGACUGGCUACACGCCA--------GUGGGUCU----CACUGAGGAGGCUGACUACCGAACAGAC ...(((.......((.....)).......((.(((((((..(((....((((.....((((((.....))))--------)))))).)----))..))))))).))......)))..... ( -30.60, z-score = -3.41, R) >droSim1.chr2R 848404 108 - 19596830 UCAUUCAAUAACACGAACUACAACCUUUCCAACCUCCUCUCUGACAUCACCCCCCUGACUGGUUACACGCCA--------GUGGGUCC----CACUGAGGAGGCUGAAUACCGAACAGAC .............................((.(((((((..((.....((((.....((((((.....))))--------))))))..----))..))))))).)).............. ( -25.80, z-score = -1.70, R) >consensus UCAUUCAAUAACACGAACUACGACCUUUCCAACCUCCUCUCUGACAUCACCCCUCUGACUGGCUACACGCCA________GUGGGUCU____CACUGAGGAGGCUGACUACCGAACAGAC .............................((.(((((((..((.....((((........(((.....)))...........))))......))..))))))).)).............. (-15.33 = -16.28 + 0.94)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:02:54 2011