| Sequence ID | dm3.chr2R |
|---|---|
| Location | 1,923,956 – 1,924,029 |
| Length | 73 |
| Max. P | 0.798305 |
| Location | 1,923,956 – 1,924,029 |
|---|---|
| Length | 73 |
| Sequences | 5 |
| Columns | 75 |
| Reading direction | forward |
| Mean pairwise identity | 79.04 |
| Shannon entropy | 0.35300 |
| G+C content | 0.63188 |
| Mean single sequence MFE | -27.06 |
| Consensus MFE | -18.26 |
| Energy contribution | -19.82 |
| Covariance contribution | 1.56 |
| Combinations/Pair | 1.23 |
| Mean z-score | -1.72 |
| Structure conservation index | 0.67 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.72 |
| SVM RNA-class probability | 0.798305 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 1923956 73 + 21146708 GUCAGCGCAGCGG-ACAGUUCGCACGGAAU-GAGCACCUACCUGUUCGGAUUCGGCGUGGGACAGGAAACUGCCC ....((((.((((-(...))))).((((.(-(((((......))))))..))))))))(((.(((....)))))) ( -28.70, z-score = -1.81, R) >droSim1.chr2R 824002 70 + 19596830 GUCAGCGCAGCGCUGCCCGCUGCACGGAAU-GAGCACCU----GUUCGACUUCGGCGCGGGACAGGAAACUGCCC ....((((((((.....)))))).((((.(-((((....----)))))..))))..))(((.(((....)))))) ( -30.10, z-score = -1.49, R) >droSec1.super_26 566359 69 + 826190 GUCAGCGCAGCGG-GCAGUUCGCACGGAAU-GAGCACCU----GUUCGACUUCGGCGUGGGACAGGAAACUGCCC ...........((-((((((.((.......-..)).(((----((((.((......)).))))))).)))))))) ( -26.70, z-score = -1.04, R) >droYak2.chr2L 1752915 64 - 22324452 GUCAGCGCUGCGA-GCAGAUCGCACAAAAUAAAGCACCU----------GUUCGGCGUGGGACAGGAAACUGCCC ....((((..(((-((((...((..........))..))----------)))))))))(((.(((....)))))) ( -24.40, z-score = -2.44, R) >droEre2.scaffold_4929 6234016 61 - 26641161 GUCAGCG--GCGG-GCAGUUCGCACAAGA-AGAGCACCU----------GUUCGGCGUGGGACAGGAGACUGCCC ....(((--.(((-((((...((.(....-.).))..))----------))))).)))(((.(((....)))))) ( -25.40, z-score = -1.81, R) >consensus GUCAGCGCAGCGG_GCAGUUCGCACGGAAU_GAGCACCU____GUUCG_CUUCGGCGUGGGACAGGAAACUGCCC ....((((.((((......)))).((((...((((........))))...))))))))(((.(((....)))))) (-18.26 = -19.82 + 1.56)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:02:52 2011