| Sequence ID | dm3.chr2R |
|---|---|
| Location | 1,876,174 – 1,876,266 |
| Length | 92 |
| Max. P | 0.500000 |
| Location | 1,876,174 – 1,876,266 |
|---|---|
| Length | 92 |
| Sequences | 7 |
| Columns | 105 |
| Reading direction | forward |
| Mean pairwise identity | 55.93 |
| Shannon entropy | 0.83729 |
| G+C content | 0.44757 |
| Mean single sequence MFE | -24.38 |
| Consensus MFE | -5.34 |
| Energy contribution | -5.94 |
| Covariance contribution | 0.61 |
| Combinations/Pair | 1.79 |
| Mean z-score | -1.57 |
| Structure conservation index | 0.22 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.02 |
| SVM RNA-class probability | 0.500000 |
| Prediction | OTHER |
Download alignment: ClustalW | MAF
>dm3.chr2R 1876174 92 + 21146708 GGUUAAGCCCCAAGUGCAUGAAAAUGCAUUUCAGGUAUG-------GUUUCCAAAUGCU----GUCACCCUAAUAUG--AUUUCAAGGCCACAACAUCUUGAGCA ((..(((((((((((((((....))))))))..))...)-------))))))...(((.----((((........))--)).((((((........))))))))) ( -21.00, z-score = -0.33, R) >droSim1.chr2R 777246 92 + 19596830 GGGUAAGCCUCAAGUGCAUGAAAAUGCAUUUCAGGUAUC-------GUUUCCAAAUGCU----GUCACCCUAAUAUG--AUUUCAAGGCCACAACAUCUUGAGCA ((((..((((.((((((((....)))))))).))))...-------((........)).----...)))).......--..(((((((........))))))).. ( -25.00, z-score = -2.04, R) >droSec1.super_26 521408 92 + 826190 GGGUAAGCCUCAAGUGCAUGAAAAUGCAUUUCAGGUAUC-------GUUUCCAAAUGCU----GUCACCCUAAUAAG--AUUUCAAGGCCACAACAUCUUGAGCA ((((..((((.((((((((....)))))))).))))...-------((........)).----...)))).......--..(((((((........))))))).. ( -25.00, z-score = -2.27, R) >droAna3.scaffold_13266 969660 99 - 19884421 GGGUGAGAGCGGAGGGCAUAAACAUGCACUUCAUGUAGCCUACGACGUUUCCUAACGUC----UGCACUCUCACCUG--GCAUCUGGUCCACUGGUUUCAAGGCC (((((((((.((.((((....(((((.....))))).)))).)((((((....))))))----..).)))))))))(--((...(((..(....)..)))..))) ( -35.20, z-score = -2.03, R) >dp4.chr3 8082634 82 - 19779522 GGCCAUUCCACAGGUGCAUAAAAAUGCAUUUCAUGUACA-------GUUUCCUAAUGCCAACCGCCGCACUAGUGCG--GUUUCAAGGCCA-------------- ((((.....(((.((((((....))))))....)))...-------.................((((((....))))--)).....)))).-------------- ( -24.70, z-score = -2.13, R) >droPer1.super_4 63534 82 - 7162766 GGCCAUUCCACAGGUGCAUAAAAAUGCAUUUCAUGUACA-------GUUUCCUAAUGCCAACCGGCGCACUAUUGCG--GUUUCAAGGCCA-------------- ((((.....(((.((((((....))))))....)))...-------(...((....(((....)))(((....))))--)...)..)))).-------------- ( -23.10, z-score = -1.35, R) >droGri2.scaffold_15245 8905023 105 + 18325388 UUUUAAAAUCAAGGAACACUCAAAAUCCCCGCCCGAAGGUUUAGCUUAACUGAAAUUCCCAGUAGUGCAUUAGUUUUAUGCAUUUCAUGUAACAUUUCUUAAGCA .....(((((..((..................))...))))).((((((..((((((..((..(((((((.......)))))))...))..).))))))))))). ( -16.67, z-score = -0.86, R) >consensus GGGUAAGCCCCAAGUGCAUAAAAAUGCAUUUCAGGUAUC_______GUUUCCAAAUGCC____GGCACACUAAUAUG__GUUUCAAGGCCACAACAUCUUGAGCA ((((.......((((((((....))))))))...............((........))............................))))............... ( -5.34 = -5.94 + 0.61)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:02:47 2011