| Sequence ID | dm3.chr2R |
|---|---|
| Location | 1,874,021 – 1,874,074 |
| Length | 53 |
| Max. P | 0.834357 |
| Location | 1,874,021 – 1,874,074 |
|---|---|
| Length | 53 |
| Sequences | 3 |
| Columns | 53 |
| Reading direction | reverse |
| Mean pairwise identity | 94.97 |
| Shannon entropy | 0.06931 |
| G+C content | 0.27213 |
| Mean single sequence MFE | -5.50 |
| Consensus MFE | -5.59 |
| Energy contribution | -5.70 |
| Covariance contribution | 0.11 |
| Combinations/Pair | 1.06 |
| Mean z-score | -1.03 |
| Structure conservation index | 1.02 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.85 |
| SVM RNA-class probability | 0.834357 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 1874021 53 - 21146708 AUUGGUAGGUUUAAAAGAUACAAACAAAGACCGUAAUUUAAAGAUAUGGCAAA ...(((..((((.........))))....)))..................... ( -3.60, z-score = 0.35, R) >droSec1.super_26 518784 52 - 826190 AUUGGUAGAUUUAAAAGAUACAAAC-AAGAGCGUAUUUUAAAGAUAUGGCAAA .(((.((.((((..(((((((....-......)))))))..)))).)).))). ( -6.50, z-score = -1.84, R) >droSim1.chr2R 774632 53 - 19596830 AUUGGUAGAUUUAAAAGAUACAAACAAAGACCGUAUUUUAAAGAUAUGGCAAA .(((.((.((((..(((((((...........)))))))..)))).)).))). ( -6.40, z-score = -1.59, R) >consensus AUUGGUAGAUUUAAAAGAUACAAACAAAGACCGUAUUUUAAAGAUAUGGCAAA .(((.((.((((..(((((((...........)))))))..)))).)).))). ( -5.59 = -5.70 + 0.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:02:46 2011