Locus 3053

Sequence ID	dm3.chr2R
Location	1,851,447 – 1,851,524
Length	77
Max. P	0.893440

overview

Window 8

Location	1,851,447 – 1,851,524
Length	77
Sequences	4
Columns	78
Reading direction	reverse
Mean pairwise identity	72.29
Shannon entropy	0.44822
G+C content	0.50158
Mean single sequence MFE	-24.80
Consensus MFE	-12.94
Energy contribution	-13.63
Covariance contribution	0.69
Combinations/Pair	1.37
Mean z-score	-1.99
Structure conservation index	0.52
Background model	dinucleotide
Decision model	sequence based alignment quality
SVM decision value	1.11
SVM RNA-class probability	0.893440
Prediction	RNA

Download alignment: ClustalW | MAF

>dm3.chr2R 1851447 77 - 21146708
GGUCCACUCUGGAGCUUCGACGCGUACUGAUC-GUUGUGAGGAGGCCAGAGUGGAUCAUUUCACCAUAGCUUGUUGUU
((((((((((((..(((((..(((.......)-))..)))))...))))))))))))..................... ( -31.00, z-score =  -2.97, R)
>droAna3.scaffold_13417 2793681 68 + 6960332
----------GGUGUUUUUACCCAUUCAGCUUCGGUUGAGUAUAGCCAGUGUGGGCCCUUCCACCAUAGGUUGUGGUU
----------((((....)))).(((((((....)))))))((((((.(((((((....)))).))).)))))).... ( -23.60, z-score =  -2.44, R)
>droSec1.super_26 495513 76 - 826190
-UUCCACUCUGCAGCUUCGACGCGUACAGAUU-GUUGUCAUGAGGCCAGGGUGGAUCAUUUCACCAUAGAUCGUUGUU
-.(((((((((..(((((((((((.......)-).))))..))))))))))))))....................... ( -22.30, z-score =  -1.37, R)
>droSim1.chr2R 749731 76 - 19596830
-UUCCACUCUGCAGCUUCGACGCGUACAGAUU-GUUGUCAUGAGGCCAGGGUGGAUCAUUCCACCAUAGAUCGUUGUU
-.(((((((((..(((((((((((.......)-).))))..))))))))))))))....................... ( -22.30, z-score =  -1.16, R)
>consensus
_UUCCACUCUGCAGCUUCGACGCGUACAGAUU_GUUGUCAUGAGGCCAGGGUGGAUCAUUCCACCAUAGAUCGUUGUU
..(((((((((..(((((...(((.((......)))))...))))))))))))))....................... (-12.94 = -13.63 +   0.69)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:02:44 2011