| Sequence ID | dm3.chr2R |
|---|---|
| Location | 1,844,301 – 1,844,358 |
| Length | 57 |
| Max. P | 0.548126 |
| Location | 1,844,301 – 1,844,358 |
|---|---|
| Length | 57 |
| Sequences | 3 |
| Columns | 57 |
| Reading direction | reverse |
| Mean pairwise identity | 87.13 |
| Shannon entropy | 0.17721 |
| G+C content | 0.26901 |
| Mean single sequence MFE | -7.74 |
| Consensus MFE | -6.13 |
| Energy contribution | -6.02 |
| Covariance contribution | -0.11 |
| Combinations/Pair | 1.22 |
| Mean z-score | -1.69 |
| Structure conservation index | 0.79 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.11 |
| SVM RNA-class probability | 0.548126 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 1844301 57 - 21146708 UUGCAAUAUUCUGACCAAAGUCAGUAACUAUCUGCAAGAAUAUAAAAAUGUAACAAA ((((((((..(((((....)))))....))).))))).................... ( -9.50, z-score = -2.44, R) >droSec1.super_26 488332 57 - 826190 AUGCAAUCUUCUGACUAAAGUCAGUAACUAUCUGCAAUAAUAUUAAAGUAUAACAAA .((((.....(((((....)))))........))))..................... ( -8.82, z-score = -2.14, R) >droSim1.chr2R 742193 57 - 19596830 AUUUAAUCUUCUGACUAAAGUCGGUAACUAUCUGCACUAAUAUUAAAGUAUAACAAA ..........(((((....)))))................................. ( -4.90, z-score = -0.49, R) >consensus AUGCAAUCUUCUGACUAAAGUCAGUAACUAUCUGCAAUAAUAUUAAAGUAUAACAAA .((((.....(((((....)))))........))))..................... ( -6.13 = -6.02 + -0.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:02:43 2011