| Sequence ID | dm3.chr2R |
|---|---|
| Location | 1,835,832 – 1,835,895 |
| Length | 63 |
| Max. P | 0.525215 |
| Location | 1,835,832 – 1,835,895 |
|---|---|
| Length | 63 |
| Sequences | 3 |
| Columns | 63 |
| Reading direction | forward |
| Mean pairwise identity | 55.85 |
| Shannon entropy | 0.61479 |
| G+C content | 0.43557 |
| Mean single sequence MFE | -11.97 |
| Consensus MFE | -6.75 |
| Energy contribution | -5.87 |
| Covariance contribution | -0.88 |
| Combinations/Pair | 1.40 |
| Mean z-score | -0.48 |
| Structure conservation index | 0.56 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.06 |
| SVM RNA-class probability | 0.525215 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 1835832 63 + 21146708 GAAAACGACGACUGACUGCAGAGAUUGCUCUUUGCCGACAAGGCACACGAUCGUCAUUUCGAA ((((..(((((.((.....((((....)))).((((.....))))..)).))))).))))... ( -16.80, z-score = -1.88, R) >droSec1.super_26 477989 61 + 826190 GUAAGUGACGACUGACUGCACAGAUUGCUCUUUGCCCACAAGGCA--CGAUCGUCUUUUCGGA ......(((((.((...(((.....)))....((((.....))))--)).)))))........ ( -13.00, z-score = 0.16, R) >droWil1.scaffold_181148 3454097 62 - 5435427 AAAAGUUUAACUUUAGUACCAAGAUUUUCUAAAGGAGACCAUAUAU-GAAUCAAUGUUGCGAG .((((.....)))).(((.((.(((((......(....).......-)))))..)).)))... ( -6.12, z-score = 0.27, R) >consensus GAAAGUGACGACUGACUGCAAAGAUUGCUCUUUGCCGACAAGGCA__CGAUCGUCAUUUCGAA ......................(((((..(((((....)))))....)))))........... ( -6.75 = -5.87 + -0.88)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:02:42 2011