| Sequence ID | dm3.chr2R |
|---|---|
| Location | 1,780,031 – 1,780,081 |
| Length | 50 |
| Max. P | 0.917882 |
| Location | 1,780,031 – 1,780,081 |
|---|---|
| Length | 50 |
| Sequences | 4 |
| Columns | 50 |
| Reading direction | reverse |
| Mean pairwise identity | 97.00 |
| Shannon entropy | 0.04868 |
| G+C content | 0.43000 |
| Mean single sequence MFE | -8.90 |
| Consensus MFE | -8.90 |
| Energy contribution | -8.90 |
| Covariance contribution | 0.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.50 |
| Structure conservation index | 1.00 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.26 |
| SVM RNA-class probability | 0.917882 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 1780031 50 - 21146708 CCCACUCCAGCUCCGGAUCUAACCAUUUGAUUUAUCGCUGUAGUCUAAGU ...(((.((((...(((((.........)))))...)))).)))...... ( -8.90, z-score = -1.54, R) >droEre2.scaffold_4929 6072650 50 + 26641161 UUCACUCCAGCUCCGGAUCUAACCAUUUGAUUUAUCGCUGUAGUCUUAGU ...(((.((((...(((((.........)))))...)))).)))...... ( -8.90, z-score = -1.49, R) >droSec1.super_26 429570 50 - 826190 UUCACUCCAGCUCCGGAUCUAACCAUUUGAUUUAUCGCUGUAGUCUAAGU ...(((.((((...(((((.........)))))...)))).)))...... ( -8.90, z-score = -1.49, R) >droSim1.chr2R 688839 50 - 19596830 UUCACUCCAGCUCCGGAUCUAACCAUUUGAUUUAUCGCUGUAGUCUAAGU ...(((.((((...(((((.........)))))...)))).)))...... ( -8.90, z-score = -1.49, R) >consensus UUCACUCCAGCUCCGGAUCUAACCAUUUGAUUUAUCGCUGUAGUCUAAGU ...(((.((((...(((((.........)))))...)))).)))...... ( -8.90 = -8.90 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:02:40 2011