| Sequence ID | dm3.chr2R |
|---|---|
| Location | 1,772,661 – 1,772,721 |
| Length | 60 |
| Max. P | 0.969281 |
| Location | 1,772,661 – 1,772,721 |
|---|---|
| Length | 60 |
| Sequences | 3 |
| Columns | 61 |
| Reading direction | forward |
| Mean pairwise identity | 57.69 |
| Shannon entropy | 0.58979 |
| G+C content | 0.31515 |
| Mean single sequence MFE | -9.83 |
| Consensus MFE | -5.92 |
| Energy contribution | -3.93 |
| Covariance contribution | -1.98 |
| Combinations/Pair | 1.71 |
| Mean z-score | -1.35 |
| Structure conservation index | 0.60 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.81 |
| SVM RNA-class probability | 0.969281 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 1772661 60 + 21146708 -UUAGAAUGAGUGUUCUAGUUGGACUAAGCAUAAAGUACAAUAGUACCAAAGCUUAUGGAA -(((((((....)))))))......(((((.....((((....))))....)))))..... ( -10.50, z-score = -0.73, R) >droEre2.scaffold_4929 6065884 60 - 26641161 CUAGAAAUUGACGUAGUAAUAUUGUAAAAAGCAAAG-AUGAGAAUAAUUGCGUUAAUGAAA ......(((((((((((....((((.....))))..-((....)).))))))))))).... ( -9.30, z-score = -2.67, R) >droSim1.chr2R 682325 55 + 19596830 -UUAGAAUGAGUGUUCUAGUUGGACUAAGCAUAAAGUA-----AUGCCAAAGCUUAUGGAA -.....((((((((((.....))))...((((......-----))))....)))))).... ( -9.70, z-score = -0.64, R) >consensus _UUAGAAUGAGUGUUCUAGUUGGACUAAGCAUAAAGUA__A_AAUACCAAAGCUUAUGGAA ......((((((((((.....))))..........((((....))))....)))))).... ( -5.92 = -3.93 + -1.98)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:02:37 2011