| Sequence ID | dm3.chr2R |
|---|---|
| Location | 1,770,287 – 1,770,352 |
| Length | 65 |
| Max. P | 0.655068 |
| Location | 1,770,287 – 1,770,352 |
|---|---|
| Length | 65 |
| Sequences | 9 |
| Columns | 67 |
| Reading direction | reverse |
| Mean pairwise identity | 73.12 |
| Shannon entropy | 0.55476 |
| G+C content | 0.50088 |
| Mean single sequence MFE | -16.20 |
| Consensus MFE | -5.94 |
| Energy contribution | -5.88 |
| Covariance contribution | -0.06 |
| Combinations/Pair | 1.36 |
| Mean z-score | -1.81 |
| Structure conservation index | 0.37 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.35 |
| SVM RNA-class probability | 0.655068 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 1770287 65 - 21146708 GCUCGCACGCACUCCAAUUUA-UUUGCACGUUGCGUGUGGGCAAAGACACCAAGUCCAAUACCAAU- ((((((((((((..(((....-.)))...).)))))))))))...(((.....)))..........- ( -20.90, z-score = -3.25, R) >droAna3.scaffold_13266 867335 56 + 19884421 UCCCACACGCACUCCAAUUUA-UUUGCACUUUGCGUGAGGACAGAGACACUAGCCCC---------- ..((.((((((...(((....-.))).....)))))).)).................---------- ( -11.00, z-score = -2.10, R) >droEre2.scaffold_4929 6063323 65 + 26641161 GCUCGCACGCACUCCAAUUUA-UUUGCACGGUGCGUGUGGGCAAAGACACCAAGCCCAAUACCAAU- (((((((((((((.(((....-.)))...)))))))))))))........................- ( -24.20, z-score = -3.69, R) >droYak2.chr2L 1549911 59 + 22324452 GCUCGCACGCACUCCAAUUUA-UUUGCACGUUGCGUGUGGG------CACCAAGCCCAAUACCAAU- ((((((((((((..(((....-.)))...).))))))))))------)..................- ( -19.40, z-score = -2.76, R) >droSim1.chr2R 680142 65 - 19596830 GCUCGCACGCACUCCAAUUUA-UUUGCACGUUGCGUGUGGGCAAAGACACCAAGCCCAAUACCAAU- ((((((((((((..(((....-.)))...).)))))))))))........................- ( -19.40, z-score = -2.49, R) >droSec1.super_26 421055 65 - 826190 GCUCGCACGCACUCCAAUUUA-UUUGCACGUUGCGUGUGGGCAAAGACACCAAGCCCAAUACCAAU- ((((((((((((..(((....-.)))...).)))))))))))........................- ( -19.40, z-score = -2.49, R) >droPer1.super_1683 894 52 - 5055 GCUCACGUACUCUCGAAUUUA-UUUGCACAUUGCGUGUGGGAGGAGACACCAA-------------- .(.((((((....((((....-)))).....)))))).)((.(....).))..-------------- ( -11.10, z-score = -0.39, R) >dp4.chr3 8008248 52 + 19779522 GCUCACGUACUCUCGAAUUUA-UUUGCACGUUGCGUGUGGGAGGAGACACCAA-------------- .(.(((((((...((((....-))))...).)))))).)((.(....).))..-------------- ( -11.10, z-score = 0.11, R) >droGri2.scaffold_15245 8812970 64 - 18325388 ---CACACAGACCGUCAUUUACUUUGCAAGUUGCGUGUGGGCAGCGACACCAAAUAAAGAUUCCAAU ---..........(((.((((.((((...(((((.((....)))))))..)))))))))))...... ( -9.30, z-score = 0.79, R) >consensus GCUCGCACGCACUCCAAUUUA_UUUGCACGUUGCGUGUGGGCAAAGACACCAAGCCCAAUACCAAU_ .(((((((.......((......))((.....))))))))).......................... ( -5.94 = -5.88 + -0.06)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:02:36 2011