| Sequence ID | dm3.chr2R |
|---|---|
| Location | 1,763,758 – 1,763,856 |
| Length | 98 |
| Max. P | 0.731724 |
| Location | 1,763,758 – 1,763,856 |
|---|---|
| Length | 98 |
| Sequences | 5 |
| Columns | 98 |
| Reading direction | reverse |
| Mean pairwise identity | 77.75 |
| Shannon entropy | 0.39279 |
| G+C content | 0.43816 |
| Mean single sequence MFE | -25.12 |
| Consensus MFE | -17.40 |
| Energy contribution | -17.56 |
| Covariance contribution | 0.16 |
| Combinations/Pair | 1.40 |
| Mean z-score | -1.36 |
| Structure conservation index | 0.69 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.53 |
| SVM RNA-class probability | 0.731724 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 1763758 98 - 21146708 GCAAUCAAUAAAGGCGACAUAAAUAAUAUCUGAUGAUAAGGCGAGUGAAGCUUUUGGAAUGGAACGCAUUUCAAGCCAGCUACGUUGGCGCCGUCGGU ..............((((........((((....)))).(((...........((((((((.....))))))))((((((...))))))))))))).. ( -28.00, z-score = -1.59, R) >droAna3.scaffold_13266 860291 94 + 19884421 --AAGCAAUAAAGUAAACAUUAAUAAUAUCUGAUGGAAAAGCAAAUUAAG-ACAAAAUCUUGAACGGAGUGUAUGUU-UCUACCCUGAUGUCAUCGGG --.........((.((((((..(((...((((.((......))..(((((-(.....)))))).)))).))))))))-)))..((((((...)))))) ( -13.90, z-score = 0.01, R) >droYak2.chr2L 1543901 90 + 22324452 ----GCAAUACAGGCGACAUAAAUAAUAUCUGAUGAUAAGGCAAGUGAAGCUCUUGGGAUGGAACGCAUUUCAAGCCAGCUACAU----ACCGUUGGU ----..........((((........((((....)))).((...(((.((((((((..(((.....)))..))))..)))).)))----.)))))).. ( -21.70, z-score = -1.00, R) >droSec1.super_26 414764 94 - 826190 ----GCAAUAAAGGCGACAUAAAUAAUAUCUGAUGAUAAGGCGAGCGAAGCUCUUGGGAUGGAACGCAUUUCAAGCCAGCUAGGUUGGCGCCGUCGGU ----..........((((........((((....)))).(((((((...))))(((..(((.....)))..)))((((((...))))))))))))).. ( -31.00, z-score = -2.10, R) >droSim1.chr2R 673789 94 - 19596830 ----GCAAUAAAGGCGACAUAAAUAAUAUCUGAUGAUAAGGCGAGCGAAGCUCUUGGGAUGGAACGCAUUUCAAGCCAGCUAGGUUGGCGCCGUCGGU ----..........((((........((((....)))).(((((((...))))(((..(((.....)))..)))((((((...))))))))))))).. ( -31.00, z-score = -2.10, R) >consensus ____GCAAUAAAGGCGACAUAAAUAAUAUCUGAUGAUAAGGCGAGUGAAGCUCUUGGGAUGGAACGCAUUUCAAGCCAGCUACGUUGGCGCCGUCGGU ..............((((........((((....)))).((((.....(((((((((((((.....)))))))))..)))).......)))))))).. (-17.40 = -17.56 + 0.16)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:02:36 2011