| Sequence ID | dm3.chr2R |
|---|---|
| Location | 1,738,897 – 1,738,988 |
| Length | 91 |
| Max. P | 0.945142 |
| Location | 1,738,897 – 1,738,988 |
|---|---|
| Length | 91 |
| Sequences | 5 |
| Columns | 91 |
| Reading direction | reverse |
| Mean pairwise identity | 95.82 |
| Shannon entropy | 0.07414 |
| G+C content | 0.39341 |
| Mean single sequence MFE | -21.12 |
| Consensus MFE | -21.14 |
| Energy contribution | -20.86 |
| Covariance contribution | -0.28 |
| Combinations/Pair | 1.19 |
| Mean z-score | -1.61 |
| Structure conservation index | 1.00 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.51 |
| SVM RNA-class probability | 0.945142 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 1738897 91 - 21146708 UAUUUAUGUGACCAAAGUCCGCAGUGACGUCAAGGCCCGCUGCAUUGAUUUCGAAUUUGUUCUGAUUGACCGAAUUCGAGCUUAUUUAUUU .......(.(((....))))((((((..((....)).))))))..(((.((((((((((.((.....)).)))))))))).)))....... ( -23.10, z-score = -2.14, R) >droSim1.chr2R 652886 91 - 19596830 UAUUUAUGUGACCAAAGUCCGCAGUGACGUCAAGGCCCGCUGCAUUGAUUUCGAAUUUGUUCUGAUUGACCGAAUUCGAGCUUAUUUAUUU .......(.(((....))))((((((..((....)).))))))..(((.((((((((((.((.....)).)))))))))).)))....... ( -23.10, z-score = -2.14, R) >droSec1.super_26 395277 91 - 826190 UAUUUAUGUGACCAAAGUCCGCAGUGACGUCAAGGCCCGCUGCAUUGAUUUCGAAUUUGUUCUGAUUGACCGAAUUCGAGCUUAUUUAUUU .......(.(((....))))((((((..((....)).))))))..(((.((((((((((.((.....)).)))))))))).)))....... ( -23.10, z-score = -2.14, R) >droYak2.chr2L 1526951 91 + 22324452 UAUUUAUGUGACCAAAGUCCGCAGUGACGUCAAGGCCUGCUGCAUUGAUUUCAAAUUUGUUCUGAUUGACAAAAUUCGAACUUAUUUAUUU ......((((((....)).))))..((.(((((.((.....)).))))).))((((..((((.((((.....)))).))))..)))).... ( -16.10, z-score = -0.30, R) >droEre2.scaffold_4929 6036311 91 + 26641161 UAUUUAUGUGACCAAAGUCCGCAGUGACGUCAAGGCCCACUGCAUUGAUUUCGAGUUUGUUCUGAUUGACCGAAUGCGAAUUUAUUUAUUU .......(.(((....))))((((((..((....)).))))))..(((.((((.(((((.((.....)).))))).)))).)))....... ( -20.20, z-score = -1.32, R) >consensus UAUUUAUGUGACCAAAGUCCGCAGUGACGUCAAGGCCCGCUGCAUUGAUUUCGAAUUUGUUCUGAUUGACCGAAUUCGAGCUUAUUUAUUU .......(.(((....))))((((((..((....)).))))))..(((.((((((((((.((.....)).)))))))))).)))....... (-21.14 = -20.86 + -0.28)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:02:35 2011