| Sequence ID | dm3.chr2R |
|---|---|
| Location | 1,727,779 – 1,727,836 |
| Length | 57 |
| Max. P | 0.801914 |
| Location | 1,727,779 – 1,727,836 |
|---|---|
| Length | 57 |
| Sequences | 6 |
| Columns | 59 |
| Reading direction | reverse |
| Mean pairwise identity | 64.09 |
| Shannon entropy | 0.65306 |
| G+C content | 0.50786 |
| Mean single sequence MFE | -15.37 |
| Consensus MFE | -5.60 |
| Energy contribution | -6.77 |
| Covariance contribution | 1.17 |
| Combinations/Pair | 1.27 |
| Mean z-score | -1.63 |
| Structure conservation index | 0.36 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.73 |
| SVM RNA-class probability | 0.801914 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 1727779 57 - 21146708 CAUCAGUCCAUCAUCCCGGACUGAAGGUUGGACCCGCAC--CUUUCACUGAGCACAAAG ..(((((((........)))))))((((((....)).))--))................ ( -14.70, z-score = -1.46, R) >droSim1.chr2R 641611 59 - 19596830 CAUCAGUCCAUCAUCCUGGACUGAACGGUGGAGCCGUUCCACUUCCACUGAGCACAAUG ..((((((((......)))))))).((((((((.........))))))))......... ( -21.60, z-score = -3.10, R) >droSec1.super_26 384443 59 - 826190 CUUCAGUCCAUCAUCCUGGACUGAACGGUGGAGCCGUUCCGCUUCCACUGAGCACAAUG .(((((((((......)))))))))(((((((((......)).)))))))......... ( -24.80, z-score = -4.17, R) >droYak2.chr2L 1515352 57 + 22324452 AAUCAGUCCGUUAUCCUGGACUGAAGGUUGGAGGCGCAC--UUUCCACUGUGCACAAAG ..((((((((......))))))))...(((...(((((.--.......))))).))).. ( -18.40, z-score = -1.89, R) >dp4.chr3 7981460 56 + 19779522 CACCAGUCAAUAAUAUCAGCUUUAG---UCCAACAGCUUCCAUGGCGGUUAGCAGAACU ..................(((....---...(((.(((.....))).))))))...... ( -5.21, z-score = 0.95, R) >droPer1.super_44 611498 56 + 614636 CACCAGUCAAUAAUAUCAGCUUUAG---UCCAACAGCUUCCAUGGCGGAUAGCAGAACU ..................(((...(---(((..((.......))..)))))))...... ( -7.50, z-score = -0.10, R) >consensus CAUCAGUCCAUCAUCCCGGACUGAA_G_UGGAGCCGCUCC_CUUCCACUGAGCACAAAG ..(((((((........)))))))...........((((..........))))...... ( -5.60 = -6.77 + 1.17)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:02:30 2011