| Sequence ID | dm3.chr2L |
|---|---|
| Location | 2,169,540 – 2,169,633 |
| Length | 93 |
| Max. P | 0.832177 |
| Location | 2,169,540 – 2,169,633 |
|---|---|
| Length | 93 |
| Sequences | 5 |
| Columns | 111 |
| Reading direction | reverse |
| Mean pairwise identity | 82.95 |
| Shannon entropy | 0.29365 |
| G+C content | 0.44854 |
| Mean single sequence MFE | -18.42 |
| Consensus MFE | -13.04 |
| Energy contribution | -13.28 |
| Covariance contribution | 0.24 |
| Combinations/Pair | 1.05 |
| Mean z-score | -1.92 |
| Structure conservation index | 0.71 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.84 |
| SVM RNA-class probability | 0.832177 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 2169540 93 - 23011544 ----------UUUCCAAAG-CCCCACCUUCGCCCUAAUCGUUAAAAGAUAUGGCCAGUUUCCUGAACACGCUAUAGAGCAUUAGCUCGUGU-------AUCAUCAGCGAUU ----------.........-...............(((((((......((((((..((((...))))..))))))((((....))))....-------......))))))) ( -16.80, z-score = -1.08, R) >droEre2.scaffold_4929 2205983 111 - 26641161 UUUUAAAAAUCCCCCUUCCCACCCACCAGCACCCUAAUCGCUUAAAGAUAUGGCCAAUUUCCUGAACACACUACAGAGCAUUAGCUCAUGUAUUACACAUCAUCAGCGAUU ...................................(((((((....(((.((..((......))..))...((((((((....)))).))))......)))...))))))) ( -16.30, z-score = -2.72, R) >droYak2.chr2L 2143754 96 - 22324452 ----------UUUCCAAAGUCCCC----CCG-CCUAAUCGUUUAAAGAUAUGGCCAAUUUCCUGAACACGCUUUAGAGCAUUAGCUCGUGUAUUACACAUCAUCAGCGAUU ----------..............----..(-((..(((.......)))..)))..............((((...((((....))))(((.....)))......))))... ( -18.50, z-score = -2.21, R) >droSec1.super_121 38921 101 - 59987 ----------UUUCCGAAGCCCCCACCUCCGCCCUAAUCGUUUAGAGAUAUGGCCAGUUUCCUGAACACGCUAUAGAGCAUUAGCUCGUGUAUUACACAUCAUCAGCGAUU ----------.(((.(((((..(((..((....((((....)))).))..)))...)))))..)))..((((...((((....))))(((.....)))......))))... ( -21.20, z-score = -1.98, R) >droSim1.chr2L_random 116555 101 - 909653 ----------UUUCCGAAGCCCCCACCUCCGCCCUAAUCGUUUAAAGAUAUGGCCAGUUUCCUGAACACGCUAUAGAGCAUUAGCUCGUGUAUUACACAUCAUCAGCGAUU ----------....................(((...(((.......)))..)))(((....)))....((((...((((....))))(((.....)))......))))... ( -19.30, z-score = -1.64, R) >consensus __________UUUCCAAAGCCCCCACCUCCGCCCUAAUCGUUUAAAGAUAUGGCCAGUUUCCUGAACACGCUAUAGAGCAUUAGCUCGUGUAUUACACAUCAUCAGCGAUU ...................................(((((((....(((.((..(((....)))..)).......((((....))))...........)))...))))))) (-13.04 = -13.28 + 0.24)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:10:25 2011