| Sequence ID | dm3.chr2R |
|---|---|
| Location | 1,717,869 – 1,717,972 |
| Length | 103 |
| Max. P | 0.639277 |
| Location | 1,717,869 – 1,717,972 |
|---|---|
| Length | 103 |
| Sequences | 6 |
| Columns | 112 |
| Reading direction | forward |
| Mean pairwise identity | 78.08 |
| Shannon entropy | 0.41212 |
| G+C content | 0.49513 |
| Mean single sequence MFE | -32.30 |
| Consensus MFE | -19.07 |
| Energy contribution | -20.60 |
| Covariance contribution | 1.53 |
| Combinations/Pair | 1.29 |
| Mean z-score | -1.50 |
| Structure conservation index | 0.59 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.31 |
| SVM RNA-class probability | 0.639277 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 1717869 103 + 21146708 ----GCUGGCUAUAAUAAGCGGUCAUUUCAUGCUCACAGCAAGGA-----GGAUGCUGGGACGGAUGAAUGGCCGUACAUGGAUUCUCGGAUGCAUGACAAACAUGCUUCAA ----((((..........(((((((((.(((.(((.(((((....-----...))))).)).).)))))))))))).((((.(((....))).)))).....)).))..... ( -32.60, z-score = -1.82, R) >droSim1.chr2R 631905 103 + 19596830 ----GCUGGCUAUAAUAAGCGGUCAUUUCAUGCUCACAGCAAGGA-----GGAUGCUGGGACGGAUGAAUGGCCGUACAUGGAUUCUCGGAUGCAUGACAAACAUGCUUCAA ----((((..........(((((((((.(((.(((.(((((....-----...))))).)).).)))))))))))).((((.(((....))).)))).....)).))..... ( -32.60, z-score = -1.82, R) >droSec1.super_26 374692 90 + 826190 -----------------AGCGGUCAUUUCAUGCUCACAGCAAGGA-----GGAUGCUGGGACGGAUGAAUGGUCGUACAUGGAUUCUCGGAUGCAUGACAAACAUGCUUCAA -----------------.(((..((((.(((.(((.(((((....-----...))))).)).).)))))))..)))............(((.(((((.....)))))))).. ( -28.10, z-score = -1.62, R) >droYak2.chr2L 1505649 100 - 22324452 ----GCUGGCUAUAAUAAGCGGUCAUUUCAUGCUCAGGGUAAGGA--------UGCUGGGACGGAUGAAUGGCCGUACAUGGAUUCUCGGAAGCAUGACAAACAUGCAUCAA ----.((((..((.....((((((((((..(((((((.((....)--------).))))).))...))))))))))......))..))))..(((((.....)))))..... ( -29.70, z-score = -1.44, R) >droEre2.scaffold_4929 6016828 107 - 26641161 ----GCUGGCUAUAAUAAGCGGUCAUUUCAUGCUCAGCGUAAGGAUGC-UGGAUGCUGGGUCGGAUGAAUGGCCGUACACGGAUUCUCGGAUGCAUGACAAACAUGCUUCAA ----.((((((......)))(((((((.((((((((((((.((....)-)..)))))))))...)))))))))).....)))......(((.(((((.....)))))))).. ( -35.10, z-score = -1.56, R) >droAna3.scaffold_13266 818718 112 - 19884421 CUUGGGCGGGCUUAAUAAAUGGUCACUCCUUACCAGGAGUGCGGACGAGCGGAUGGACAGUCUGCUGCUAGCACAUAUAGGGAUUCUCGGAGGCAUGACAGACAUGCUCCAA ((((.((.(((..........(.(((((((....)))))))).....(((((((.....)))))))))).)).....)))).......((((.((((.....)))))))).. ( -35.70, z-score = -0.75, R) >consensus ____GCUGGCUAUAAUAAGCGGUCAUUUCAUGCUCACAGCAAGGA_____GGAUGCUGGGACGGAUGAAUGGCCGUACAUGGAUUCUCGGAUGCAUGACAAACAUGCUUCAA ..................(((((((((.(((.(((.(((((............))))).)).).))))))))))))............(((.(((((.....)))))))).. (-19.07 = -20.60 + 1.53)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:02:26 2011