| Sequence ID | dm3.chr2R |
|---|---|
| Location | 1,703,941 – 1,704,035 |
| Length | 94 |
| Max. P | 0.653033 |
| Location | 1,703,941 – 1,704,035 |
|---|---|
| Length | 94 |
| Sequences | 4 |
| Columns | 96 |
| Reading direction | reverse |
| Mean pairwise identity | 69.47 |
| Shannon entropy | 0.50008 |
| G+C content | 0.56089 |
| Mean single sequence MFE | -32.73 |
| Consensus MFE | -17.06 |
| Energy contribution | -15.88 |
| Covariance contribution | -1.19 |
| Combinations/Pair | 1.54 |
| Mean z-score | -1.34 |
| Structure conservation index | 0.52 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.34 |
| SVM RNA-class probability | 0.653033 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 1703941 94 - 21146708 CUACGG-AAGCGAGUAGGAGCUCUGCCGUUGACAGCUUCUGGUGGAGGGCGGCGAGCGGCGAUGUCGGUGGGCAUCUACAUUU-ACAAAAUGUUAU ((((..-......))))..((((.((((((..((.(....).))...))))))))))...((((((....)))))).(((((.-....)))))... ( -29.50, z-score = -0.34, R) >droSim1.chr2R 618927 94 - 19596830 CUGCGG-AAGCGAGUAGGAGCUCUGCCGCUGACAGCUCCGGGUGGAGGGUGGCGGGCGGCGAUGUGGGUGGGCAACUACAUUU-ACAAAAUGUUAU .(((..-..))).((....((.((((((((.....((((....)))))))))))))).))..((((.((((....))))...)-)))......... ( -33.50, z-score = -1.05, R) >droSec1.super_26 360843 85 - 826190 CUGCGG-AAGCGAGUAGGAGCUCUGCCGCUGACAGCUUCAGGUGGAGGAUGGCGGGC---------GGUGGGCAUCUACAUUU-ACAAAAUGUUAU .(((..-..))).((((..((.(..(((((..((.((((.....)))).))...)))---------))..)))..))))....-............ ( -31.30, z-score = -2.24, R) >droMoj3.scaffold_6496 2962051 96 - 26866924 UUGUGGUAAACGUGUUGAAGGGCUGCCGCUGCCGUUGACAGCCAAAGAGCGAGCGAGGGCGGGGCUCGGCCCUAAAAACAUUUCCCAAAAUUUCAU (((.((.....(((((..(((((((((.(((((.(((...((......))...))).))))))))..))))))...)))))..)))))........ ( -36.60, z-score = -1.74, R) >consensus CUGCGG_AAGCGAGUAGGAGCUCUGCCGCUGACAGCUUCAGGUGGAGGGCGGCGGGCGGCGAUGU_GGUGGGCAACUACAUUU_ACAAAAUGUUAU .(((.....))).((((..((((.((((((..((.(....).))...))))))...((((...))))..))))..))))................. (-17.06 = -15.88 + -1.19)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:02:24 2011