| Sequence ID | dm3.chr2R |
|---|---|
| Location | 1,689,074 – 1,689,193 |
| Length | 119 |
| Max. P | 0.525312 |
| Location | 1,689,074 – 1,689,193 |
|---|---|
| Length | 119 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 92.23 |
| Shannon entropy | 0.13611 |
| G+C content | 0.44796 |
| Mean single sequence MFE | -37.34 |
| Consensus MFE | -30.12 |
| Energy contribution | -29.88 |
| Covariance contribution | -0.24 |
| Combinations/Pair | 1.14 |
| Mean z-score | -1.72 |
| Structure conservation index | 0.81 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.06 |
| SVM RNA-class probability | 0.525312 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 1689074 119 + 21146708 -UUUGGGGGUGUAACUCCAACUUCCAAGCGAUUUCAUUGAUCAACGGUUUCCAUGGCUCUGCCGGUUGUGUCAAUGAGCUGCAGUUGUUCGGCUUGGAUAAUUGGAAAAUCAGGGAAUCA -.((((((......)))))).((((.(((....((((((((((((((...)).((((...)))))))).))))))))))).(((((((((.....))))))))).........))))... ( -35.10, z-score = -0.68, R) >droSim1.chr2R 603856 120 + 19596830 UGUUGGGGGUGUAACUCCAACUUCCAAGCGAUUUCAUUGAUCAACGGUUUCCAUGGUUCUGCCGGUUGUGUCAAUGAGCUGCAGUUGUUCGGCUGGGAUAAUUGGAAAAUCAGGGAAUCA .(((((((......)))))))........((((.....))))...(((((((.(((((...((((((((.(((.(((((.......)))))..))).))))))))..)))))))))))). ( -41.30, z-score = -2.31, R) >droSec1.super_26 345844 119 + 826190 UGUUGGGG-UGUAACUCCAACUUCCAAGCGAUUUCAUUGAUCAACGGCUUCCAUGGUUCUGCCGGUUGUGUCAAUGAGCUGCAGUUGUUCGGCUUGGAUAAUUGCAAAAUCAGGGAAUCA .(((((((-.....)))))))((((....(((((((((((((((((((..(....)....))).)))).))))))))..(((((((((((.....))))))))))).))))..))))... ( -42.60, z-score = -3.03, R) >droYak2.chr2L 1478278 119 - 22324452 -UGUGGGGGUGUAAUACCAACUUCCAAACGAUUUCAUUGAUCAACGGCUUCUAUGGUUCUGCCGGUUGUGUCAAUGAGCUGCAGUUGUUCGGCUUAAAUAAUUGAAAAUUAAGGAAAUCA -..(((((((.........)))))))...((((((.((((((((((((............))).)))).)))))(((((((........))))))).................)))))). ( -31.50, z-score = -1.42, R) >droEre2.scaffold_4929 5989327 119 - 26641161 -UUUGGGGGUGUAACACCAACUUCCAAGCGAUUUCAUUGAUCAACGGUUGCCAUGGUUCUGCCGGUUGUGUCAAUGAGCUGUAGUUGUUUGGCUUGGAUAAUUGGAAAUUCAGGGAAUCA -...(..((((...))))..)..(((((((((((((((((((((((((.((....))...))).)))).)))))))).....))))))))))(((((((........)))))))...... ( -36.20, z-score = -1.16, R) >consensus _UUUGGGGGUGUAACUCCAACUUCCAAGCGAUUUCAUUGAUCAACGGUUUCCAUGGUUCUGCCGGUUGUGUCAAUGAGCUGCAGUUGUUCGGCUUGGAUAAUUGGAAAAUCAGGGAAUCA ..((((((((.........))))))))..(((((((((((((((((((..(....)....))).)))).))))))......(((((((((.....))))))))).........)))))). (-30.12 = -29.88 + -0.24)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:02:23 2011