| Sequence ID | dm3.chr2R |
|---|---|
| Location | 1,668,308 – 1,668,382 |
| Length | 74 |
| Max. P | 0.976583 |
| Location | 1,668,308 – 1,668,382 |
|---|---|
| Length | 74 |
| Sequences | 3 |
| Columns | 74 |
| Reading direction | reverse |
| Mean pairwise identity | 93.69 |
| Shannon entropy | 0.08687 |
| G+C content | 0.37838 |
| Mean single sequence MFE | -19.83 |
| Consensus MFE | -17.77 |
| Energy contribution | -18.10 |
| Covariance contribution | 0.33 |
| Combinations/Pair | 1.00 |
| Mean z-score | -2.58 |
| Structure conservation index | 0.90 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.95 |
| SVM RNA-class probability | 0.976583 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 1668308 74 - 21146708 CAACUAGACAGGAAAAGGGUAUCUUAUUGUCUAUCAAAGAUAAUAACAAGCUCUUCUGGCGAUUUGAUUGGCAA ........((((...(((((.(.(((((((((.....))))))))).).)))))))))((.(......).)).. ( -15.90, z-score = -1.68, R) >droSim1.chr2R 573001 74 - 19596830 CAACUAGCCAGGUAAAGGGUAUCUUAUUGUCUAUCAAAGAUAAUAAUAAGCUCGUCUGGCGAUUUGAUAGGCUA (((...((((((....((((.(.(((((((((.....))))))))).).)))).))))))...)))........ ( -20.70, z-score = -2.75, R) >droSec1.super_26 307020 74 - 826190 CAACUAGCCAGGUAAAGGGUAUCUUAUUGUCUAUCAAAGAUAAUAAUAAGCUCGUCUGGCGCUUUGAUAGGCUA ......((((((....((((.(.(((((((((.....))))))))).).)))).))))))((((....)))).. ( -22.90, z-score = -3.31, R) >consensus CAACUAGCCAGGUAAAGGGUAUCUUAUUGUCUAUCAAAGAUAAUAAUAAGCUCGUCUGGCGAUUUGAUAGGCUA (((...((((((....((((.(.(((((((((.....))))))))).).)))).))))))...)))........ (-17.77 = -18.10 + 0.33)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:02:22 2011