| Sequence ID | dm3.chr2R |
|---|---|
| Location | 1,640,052 – 1,640,146 |
| Length | 94 |
| Max. P | 0.686199 |
| Location | 1,640,052 – 1,640,146 |
|---|---|
| Length | 94 |
| Sequences | 6 |
| Columns | 118 |
| Reading direction | forward |
| Mean pairwise identity | 66.51 |
| Shannon entropy | 0.56609 |
| G+C content | 0.49914 |
| Mean single sequence MFE | -29.61 |
| Consensus MFE | -15.16 |
| Energy contribution | -16.58 |
| Covariance contribution | 1.42 |
| Combinations/Pair | 1.26 |
| Mean z-score | -1.09 |
| Structure conservation index | 0.51 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.42 |
| SVM RNA-class probability | 0.686199 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 1640052 94 + 21146708 GCCGUGGCUGCGGGAACAGGA--UUGGAGUUUCGGU------UUUGUGCAGAGAUAGGGAUGCAGCAGCGAUGGCGAUGACGAUUAAUUCUUUGGGUCUUCG---------------- (((((.(((((....((((((--((((....)))))------)))))(((..........))).))))).)))))((.(((..............))).)).---------------- ( -31.64, z-score = -1.85, R) >droSim1.chr2R 542123 93 + 19596830 GCCGUUGCUGCGGGAACAGGA--UUGGAGUUUCG-C------CUUGUGCAGAGAUAGGGAUACAGCAGCGAUGGCGAUGACGAUUAAUUCUUUGGGUCUGCA---------------- (((((((((((.(((((....--.....))))).-(------(((((......)))))).....)))))))))))(((..(((........))).)))....---------------- ( -31.80, z-score = -1.61, R) >droSec1.super_26 277627 93 + 826190 GCCGUUGCUGCGGGAACAGGA--UUGGAGUUUCG-C------UUUGUGCAGAGAUAGGGAUACAGCAGCGAUGGCGAUGACGAUUAAUUCUUUGGGUCUGCA---------------- ((((((((((((....)....--.((..((..(.-(------(((....))))...)..)).)))))))))))))(((..(((........))).)))....---------------- ( -29.20, z-score = -1.12, R) >droYak2.chr2L 1410512 94 - 22324452 GCCGUUGCUGCGGAAACAGGA--UUGGGUAUUCGGU------CUUGGGCAGAUUUAAAGAUGCGGCAGCGAUGGCUAUGACGAUUAUUUUUUUAGGUGUUCA---------------- (((((((((((.....(((((--((((....)))))------)))).(((..........))).)))))))))))......((.(((((....))))).)).---------------- ( -32.90, z-score = -3.33, R) >droEre2.scaffold_4929 5919874 88 - 26641161 GCCGUUGCUGCGGAAAGAGGA--UUGGGCUUUCGGU------UUUGGGCAGAGAUAAAAAUGCACCAACGAUGGC------GAUUAUUUCUUUAGGUCUCCA---------------- (((((((..((.(((((....--.....))))).))------.(((((((..........))).)))))))))))------.....................---------------- ( -21.20, z-score = 0.68, R) >droGri2.scaffold_15245 8478795 118 + 18325388 GCCGUUGCUGUGGCAACAAGGAGUCAAUGUUUUUGUACUCGAUUUGUGGACAGCCAUCGAUUCGACAGAGCAAAAAGCGUGCAACGUCUCGCUGAAUGUAUUGUAAGUGGCCUUCGUA ((((((((....)))))...(((((((.....))).))))((.((((((....))).))).)).((((.(((...((((.(......).))))...))).))))....)))....... ( -30.90, z-score = 0.67, R) >consensus GCCGUUGCUGCGGGAACAGGA__UUGGAGUUUCGGU______UUUGUGCAGAGAUAGGGAUGCAGCAGCGAUGGCGAUGACGAUUAAUUCUUUGGGUCUGCA________________ (((((((((((.(((((...........)))))..............(((..........))).)))))))))))........................................... (-15.16 = -16.58 + 1.42)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:02:21 2011