| Sequence ID | dm3.chr2R |
|---|---|
| Location | 1,624,086 – 1,624,181 |
| Length | 95 |
| Max. P | 0.839827 |
| Location | 1,624,086 – 1,624,181 |
|---|---|
| Length | 95 |
| Sequences | 12 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 82.95 |
| Shannon entropy | 0.33535 |
| G+C content | 0.43076 |
| Mean single sequence MFE | -21.07 |
| Consensus MFE | -17.02 |
| Energy contribution | -16.78 |
| Covariance contribution | -0.24 |
| Combinations/Pair | 1.06 |
| Mean z-score | -1.41 |
| Structure conservation index | 0.81 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.87 |
| SVM RNA-class probability | 0.839827 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 1624086 95 + 21146708 -------UGUUCACGUCGAUUAUUAUCGCGGCAAUAAGCAAAACUAUUGCCGACACAUGUAUCCGUUUAUUUGUCAUGACUUUUUCCCUUAUCAGCCGAGCC------------------ -------.((((.....(((....)))(((((((((........)))))))((((.(((........))).))))...................)).)))).------------------ ( -19.80, z-score = -1.61, R) >droSim1.chr2R 524886 95 + 19596830 -------UGUGCCCGUCGAUUAUUAUCGCGGCAAUAAGCAAAACUAUUGCCGACACAUGUAUCCGUUUAUUUGUCAUGACUUUUUCCCUUAUCAGCCGAGCC------------------ -------...((.((..(((....)))(((((((((........)))))))((((.(((........))).))))...................)))).)).------------------ ( -18.70, z-score = -0.97, R) >droSec1.super_26 260511 95 + 826190 -------UGUUCCCGUCGAUUAUUAUCGCGGCAAUAAGCAAAACUAUUGCCGACACAUGUAUCCGUUUAUUUGUCAUGACUUUUUCCCUUAUCAGCCGAGCC------------------ -------.((((.....(((....)))(((((((((........)))))))((((.(((........))).))))...................)).)))).------------------ ( -18.90, z-score = -1.54, R) >droYak2.chr2L 1396096 95 - 22324452 -------UGUUCACGUCGAUUAUUAUCGCGGCAAUAAGCAAAACUAUUGCCGACACAUGUAUCCGUUUAUUUGUCAUGACUUUUUCCCUUAUCAGCCGAACC------------------ -------.((((.....(((....)))(((((((((........)))))))((((.(((........))).))))...................)).)))).------------------ ( -19.80, z-score = -1.99, R) >droEre2.scaffold_4929 5903741 95 - 26641161 -------UGUUCACGUCGAUUAUUAUCGCGGCAAUAAGCAAAACUAUUGCCGACACAUGUAUCCGUUUAUUUGUCAUGACUUUUUCCCUUAUCAGCCGAACC------------------ -------.((((.....(((....)))(((((((((........)))))))((((.(((........))).))))...................)).)))).------------------ ( -19.80, z-score = -1.99, R) >droAna3.scaffold_13266 676129 94 - 19884421 -------UGUCCAUGUCGAUUAUUAUCGCGGCAAUGAGCAAAACUAUUGCCGACACAUGUAUCCGUUUAUUUGUCAUGACUUUU-CCCUUAUCGACCGACCC------------------ -------.(((...((((((.........(((((((........)))))))((((.(((........))).)))).........-.....)))))).)))..------------------ ( -21.70, z-score = -2.30, R) >dp4.chr3 4678461 94 - 19779522 -------UGUUCAUGUCGAUUAUUAUCGCGGCAAUGAGCAAAACUAUUGCCGACACAUGUAUCCGUUUAUUUGUCAUGACUUUU-CCCUUAUCGACCGACCC------------------ -------.(((...((((((.........(((((((........)))))))((((.(((........))).)))).........-.....)))))).)))..------------------ ( -19.90, z-score = -1.57, R) >droPer1.super_4 3949871 94 + 7162766 -------UGUUCAUGUCGAUUAUUAUCGCGGCAAUGAGCAAAACUAUUGCCGACACAUGUAUCCGUUUAUUUGUCAUGACUUUU-CCCUUAUCGACCGACCC------------------ -------.(((...((((((.........(((((((........)))))))((((.(((........))).)))).........-.....)))))).)))..------------------ ( -19.90, z-score = -1.57, R) >droWil1.scaffold_180569 1282447 111 + 1405142 UGUUGUGUAUGCCCGUCGAUUAUUAUCGCGGCAAUGAGCAAAACUAUUGCCGACACAUGUAUCCGUUUAUUUGUCAUGACUUUUUCCCUUACGA--CGAGUUUGAGCGAACCC------- ..((((....((.(((((...........(((((((........)))))))((((.(((........))).))))................)))--)).))....))))....------- ( -25.70, z-score = -1.26, R) >droVir3.scaffold_10324 525534 89 - 1288806 -------UGUUCAUGUCGAUUAUUAUCGCGGCAAUGAGCAAAACUAUUGCCGACACAUGUAUCCGUUUAUUUGUCAUGACUUUCGGUAGCCCGGCA------------------------ -------(((((((((((..........)))).))))))).......((((((((.(((........))).)))).........((....))))))------------------------ ( -21.80, z-score = -0.63, R) >droMoj3.scaffold_6496 24262249 112 - 26866924 -------UGUUCAUGUCGAUUAUUAUCGCGGCAAUGAGCAAAACUAUUGCCGACACAUGUAUCCGUUUAUUUGUCAUGACUUUUG-UGCACAGGUCCCUUUCAGCCUGCCAGCCCUCCAG -------(((.((.((((...........(((((((........)))))))((((.(((........))).)))).))))...))-.)))(((((........)))))............ ( -24.40, z-score = -0.68, R) >droGri2.scaffold_15245 9864308 90 - 18325388 -------UGUUCAUGUCGAUUAUUAUCGCGGCAAUGAGCAAAACUAUUGCCGACACAUGUAUCCGUUUAUUUGUCAUGACUUUGG-UGCACCAGCACA---------------------- -------...(((((.((((....)))(((((((((........)))))))).)..................).))))).....(-(((....)))).---------------------- ( -22.40, z-score = -0.82, R) >consensus _______UGUUCACGUCGAUUAUUAUCGCGGCAAUGAGCAAAACUAUUGCCGACACAUGUAUCCGUUUAUUUGUCAUGACUUUUUCCCUUAUCAGCCGAGCC__________________ ..............((((...........(((((((........)))))))((((.(((........))).)))).))))........................................ (-17.02 = -16.78 + -0.24)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:02:18 2011